Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00836 ATGGCGGCCGCAAATCTCTTCACTCCTTCACCTTCCCTACCCAGAACCCTAAAACACTCTCTTAACTCGATATCCATTGCCCGCGTTCCGATTCGACTTCACAAACCTTTCAAAAATCTCTCCCTTAAAGCTGTTCTTTCACAAAGCCCCTCTAAAACTCAGCCTGAAACAGCCCAATTTCAGCATTGTTTCTCCAAATCCTCTGATGGGTTCCTTTACTGCGAGGGGATTAAGGTTCAGGAAGTCATGGAATCGGTTGATAAACGCCCTTTTTACCTATACAGCAAGCCCCAGATAACTAGAAATGTTGAGGCTTACAAAGAGGCTTTGGAAGGGCTGAATTCGATCATTGGTTATGCGATTAAGGCCAATAATAATTTGAAAGTTTTGGAGCATTTGAGGAAGTTGGGTTGTGGGGCTGTGCTTGTTAGTGGAAATGAGCTTCGGTTGGCTCTTCATGCCGGTTTTGATCCCACCAGATGTATTTTTAATGGGAACGGTAAGCTTTTGGAGGATTTGGTTCTAGCTGCGGAACAAGGTGTTTTTGTCAATGTGGATAGTGAGTTTGACTTGGAAAATATTGTGGCTGCCGCAAGAATTTCTGCAAAGAAAGTTAATGTTTTACTTCGTATTAATCCGGATGTGGACCCTCAGGTACATCCTTACGTTGCCACTGGTAACAAAAACTCAAAATTCGGTATTAGAAATGAAAAGTTGCAATGGTTTCTTGATGCTGTCAAGGCACATCCCGACGAGCTTAAGCTTGTTGGGGCCCATTGCCATCTTGGTTCAACCATCACCAAGGTGGACATATTCAGAGATGCTGCAGAACTAATGGTCAACTACATTGACCAGATCAGAGATCAAGGTTTTGATGTCAACTACCTAAACATTGGAGGTGGACTTGGGATAGATTATTATCATGCTGGTGCCATTCTTCCTACTCCCAGAGATCTAATTAATACGGTACGGGAGCTGGTCCTTTCACGAGATCTTAATCTAATCATTGAACCCGGGAGGTCACTTATCGCCAATACTTGCTGTTTGGTTAATCGAGTGACGGGGGTAAAAACTAACGGGACGAAAAACTTCATTGTAATCGATGGAAGCATGGCTGAACTTATCCGTCCTAGTCTTTATGATGCTTATCAACACATAGAGTTGGTTGCCCCTGCATCGCCTGGTGCCGAGATCTCAACTTTCGATGTGGTTGGTCCGGTCTGTGAGTCTGCAGATTTCTTAGGGAAGCAAAGGGAACTCCCAACTCCAACCAAGGGGGCTGGCTTGGTTGTCCATGATGCTGGTGCTTACTGCATGAGTATGGCATCGACTTACAATCTCAAGATGCGCCCTCCCGAGTACTGGGTTGAAGAAGATGGATCAGTGTCCAAAATCAGGCATGGCGAGTCGTTCGACGACCACCTCCGGTTCTACCGCACTTCCGTGGAAGCTGGGCGTGCGGGGAAAAATCATTGA 1476 45.53 MAAANLFTPSPSLPRTLKHSLNSISIARVPIRLHKPFKNLSLKAVLSQSPSKTQPETAQFQHCFSKSSDGFLYCEGIKVQEVMESVDKRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLEDLVLAAEQGVFVNVDSEFDLENIVAAARISAKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAELMVNYIDQIRDQGFDVNYLNIGGGLGIDYYHAGAILPTPRDLINTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPASPGAEISTFDVVGPVCESADFLGKQRELPTPTKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGESFDDHLRFYRTSVEAGRAGKNH 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4000058 4009116 + CmaCh20G008360.1 Cma20g00836 316650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00836 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 334 353 IPR000183 GO:0003824
Cma20g00836 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 252 265 IPR000183 GO:0003824
Cma20g00836 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 119 137 IPR000183 GO:0003824
Cma20g00836 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 139 151 IPR000183 GO:0003824
Cma20g00836 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 435 448 IPR000183 GO:0003824
Cma20g00836 491 PANTHER DIAMINOPIMELATE DECARBOXYLASE 52 477 - -
Cma20g00836 491 Gene3D Alanine racemase 96 341 IPR029066 -
Cma20g00836 491 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 345 435 IPR022643 GO:0003824
Cma20g00836 491 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 52 477 - -
Cma20g00836 491 PRINTS Diaminopimelate decarboxylase signature 225 234 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 PRINTS Diaminopimelate decarboxylase signature 137 154 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 PRINTS Diaminopimelate decarboxylase signature 445 467 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 PRINTS Diaminopimelate decarboxylase signature 362 380 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 SUPERFAMILY PLP-binding barrel 89 345 IPR029066 -
Cma20g00836 491 CDD PLPDE_III_DapDC 90 456 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 119 137 IPR022653 -
Cma20g00836 491 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 78 475 IPR009006 GO:0003824
Cma20g00836 491 SUPERFAMILY Alanine racemase C-terminal domain-like 320 477 IPR009006 GO:0003824
Cma20g00836 491 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 290 303 IPR022657 -
Cma20g00836 491 TIGRFAM lysA: diaminopimelate decarboxylase 67 475 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 Hamap Diaminopimelate decarboxylase [lysA]. 76 479 IPR002986 GO:0008836|GO:0009089
Cma20g00836 491 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 98 344 IPR022644 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00836 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] - csv:101208417 872.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00386 Cma-Chr12:1995836 Cma20g00836 Cma-Chr20:4000058 3.92E-10 dispersed
Cma12g00387 Cma-Chr12:1998639 Cma20g00836 Cma-Chr20:4000058 1.21E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g352 . . . . . . . . . . . Cma20g00836 . Car20g00722 . . . . . . . . . . . . . . . . . . . . . Lsi10g00389 . Chy11g00364 . . . . . . . . . Sed01g0290 . Cmo20g00844 . . . . Cpe16g00254 . Bhi10g01983 Tan05g1282 Cmetu11g0387 . . . . . . . . . . . . Csa02g01279 . Cme11g00133
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011287 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 1 1 2 1 0 1 1 0 0 1 1 1 2 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00836 Cma_Chr20 FPKM 69.963898 76.44664 70.985504 75.341881 177.345795 151.685608 187.252411 47.981297 43.276085 50.230026