Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00837 ATGGCTGCCGATCCTCTGACAAGCTCGAATGGAAATGCCAATGTCAATGCACCACCTAATCCGCGAAGGACTTATCAAGTCGTTGTAGCTGCTACTGAAAATATGGGTATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAAATTTTTTAAGAACATAACCACGACAACATCAGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCGGCTGAGTATCGACCTCTACCTGGTCGTCTCAATGTTGTTCTGACTCGTTCTGGAAGTTTCGACATTGCCACTGTCGAAAATGTTATAATATGTGGTAGTATGACATCTGCTTTGGAATTATTAGCAGCTTCGCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGTGGTGGTGAGATATTAAGGGAAGCTCTGAACGCCCCCGAGTGTGATGCTGTCCACGTTACTGAAATTGAGACAAACGTTGAATGCGACACCTTCATACCAGCTATTGACAAGTCTATGTTTCAGCCATGGTACTCATCCTTTCCCATGGTGGAAAATAACTTACGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACCGAACCACCCATTGATCAGAACAATGGTCTGGTCTCTCATAACAAACCCGATTCTTTTAATAAGAACTTCTCTTTCCTACCCAAGGAGATTTTCGAGAGGCACGAGGAGTACTTGTACCTAAAACTTGTTCAAGAAATCATCTCAGACGGTACTTCCAAGGATGATAGAACGGGAACGGGTACTTTATCAAAATTTGGTTGCCAGAACTTCTTTGGTTCATCAGTGGCTCAACCAATGCAAAGTATTGGTTTAAGAGAAAGGGAGGAAGGCGACTTGGGACCTGTATACGGGTTTCAGTGGCGACACTTTGGTGCTAGGTATACTGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCCAATGATCGGAGGATCGTTCTTTCTGCGTGGAATCCATCTGATCTCAAACTGATGGCACTCCCGCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAACGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGATATGGGCCTTGATCTTGCTTACGGAGACTTCATACATGTGATCGGAGACGCTCATGTTTACCGTACTCACGTGCGGCCATTGCAGGAACAGCTTCAGAAACTCCCCAAACCGTTCCCTGTTTTGAAAATAAACCCTGAGAAGAAGGATATCGATTCGTTCGTGGCAGCTGATTTCGAGCTAACAGGTTATGACCCTCATGAGAAGATAGCAATGAAAATGGCATTTCATAAGTATAAAGAGATGCTCTACCTCACATTATCGTGTAACAACTTTTGTATTTTATAA 1440 43.12 MAADPLTSSNGNANVNAPPNPRRTYQVVVAATENMGIGKDGKLPWRLPSDLKFFKNITTTTSDHGKRNAVLMGRKTWESIPAEYRPLPGRLNVVLTRSGSFDIATVENVIICGSMTSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAVHVTEIETNVECDTFIPAIDKSMFQPWYSSFPMVENNLRYSFTSYVRVRSSTEPPIDQNNGLVSHNKPDSFNKNFSFLPKEIFERHEEYLYLKLVQEIISDGTSKDDRTGTGTLSKFGCQNFFGSSVAQPMQSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLDLAYGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPVLKINPEKKDIDSFVAADFELTGYDPHEKIAMKMAFHKYKEMLYLTLSCNNFCIL 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4009158 4015003 + CmaCh20G008370.1 Cma20g00837 316651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00837 479 Gene3D Dihydrofolate Reductase, subunit A 8 203 IPR024072 -
Cma20g00837 479 SUPERFAMILY Dihydrofolate reductase-like 20 201 IPR024072 -
Cma20g00837 479 PANTHER THYMIDYLATE SYNTHASE 1 285 459 IPR045097 GO:0016741
Cma20g00837 479 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 230 280 IPR036926 -
Cma20g00837 479 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Cma20g00837 479 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 278 - -
Cma20g00837 479 PRINTS Thymidylate synthase family signature 375 401 IPR000398 GO:0004799|GO:0006231
Cma20g00837 479 PRINTS Thymidylate synthase family signature 331 350 IPR000398 GO:0004799|GO:0006231
Cma20g00837 479 PRINTS Thymidylate synthase family signature 357 372 IPR000398 GO:0004799|GO:0006231
Cma20g00837 479 PIRSF DHFR-TS 388 460 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cma20g00837 479 PIRSF DHFR-TS 278 392 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cma20g00837 479 PIRSF DHFR-TS 10 285 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cma20g00837 479 CDD TS_Pyrimidine_HMase 245 413 IPR023451 -
Cma20g00837 479 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 281 460 IPR036926 -
Cma20g00837 479 CDD DHFR 28 200 IPR001796 GO:0004146|GO:0046654
Cma20g00837 479 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 285 459 - -
Cma20g00837 479 ProSitePatterns Thymidylate synthase active site. 342 370 IPR020940 GO:0004799|GO:0006231
Cma20g00837 479 PANTHER THYMIDYLATE SYNTHASE 1 1 278 IPR045097 GO:0016741
Cma20g00837 479 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146
Cma20g00837 479 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 233 459 IPR036926 -
Cma20g00837 479 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146|GO:0046654
Cma20g00837 479 MobiDBLite consensus disorder prediction 1 21 - -
Cma20g00837 479 Pfam Thymidylate synthase 293 391 IPR023451 -
Cma20g00837 479 Pfam Thymidylate synthase 389 459 IPR023451 -
Cma20g00837 479 TIGRFAM thym_sym: thymidylate synthase 293 389 IPR000398 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00837 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 812.757
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00385 Cma20g00837 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00385 Cma-Chr2:1947586 Cma20g00837 Cma-Chr20:4009158 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00837 Cma_Chr20 FPKM 13.951736 17.023014 15.786098 17.802391 15.626579 15.425227 16.307289 14.840385 15.01868 14.431746