Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00840 ATGCTTTGTCAATTGAAGGGACCGATGGATTCCTACTCTGTTTCTTTCAAAGCTAATACCCATTTATCGAGTGATCTGAAGAATGGGTTTCATGGGGAGAAAGTTAGAGGAAGTTTCAATGAAAATGGTTGGGTTAATCGCTTAGCTAAGACCTTCAAATCTGACAAGAAAGCTTTGAAGCTCTCCCCTAATGTTGCTTATGCTGTCGCCACGCCTAATCTCTCCAAGCAGGCTGCGAGCATTCAAGCGCCGCCGTTTTTCAAAGCAAAGGTGAATCCTAAGAATGTTGCTTCCATCATATTGGGAGGGGGAGCTGGGACTCAGCTGTTTCCTCTTACTAGAAGATCAGCTACACCCGCTGTTCCAGTTGGAGGATGCTATAGGCTTATTGATATTCCAATGAGCAACTGCATCAACAGTGGGATCAACAAGATATTTGTGCTTACTCAATTCAACTCTGCTTCGTTGAATCGGCATATTTCACGAACCTACTTCGGAAATGGTGTCAGTTTTGGAGAAGGATTTGTGGAGGTTCTTGCAGCCACTCAAACACCAGGGAAATCTGGTATGTATTGGTTCCAAGGAACTGCTGATGCTGTGAGACAATTTACTTGGGTGTTTGAGGATGCCAAGAACAGGAATGTTGAGAACATTCTAATTTTGGCAGGGGATCACATGTACAGAATGGACTATATGGACTTTGTGCAGAACCACATTGATCGAAACGCTGATATTTCAATCTCGTGCGCAGCTGTGGGGGACAGCCGTGCATCAGACTACGGAGTGGTGAAAATTGACAGTAGAGGTCGGATTATCCAGTTTGCTGAAAAACCAAAGGGTGCCAATTTGAATGCAATGCGAGTAGATACAACTTCATTAGGTTTGTCTCGGGAGGAGTCGTTGAAGTCTCCTTACATTGCGTCAATGGGAGTTTATGTTTTCAAAACGGATATTTTGTTAAACCTTTTGAAGGGGAGATATCCTACATCTAATGACTTTGGTTCTGAAATCATTCCTGCAGCTGTGAAGGAGCATAATGTCCAAGCATACATATTTAGAGACTATTGGGAGGACATTGGAACAATAAAGACCTTCTACGATGCAAACTTGGCCCTCACGGAAGAGTTTCCTAAGTTTGAATTCTATGACCCCAAGACACCTTTCTATACATCTCCTCGATTCCTACCGCCAACCAAGATCGACAAATGTCAGATTGTCGATGCAATAATCTCACATGGATGCTTTCTGAGAGAATGCAATGTCCAGCATTCGATAGTCGGTGAGCGGTCAAGATTAGACTATGGTGTCGAACTTAAGGACACTATAATGATGGGCGCAGACAATTACCAAACCGAACCCGAAATTGCTGCTCTGCTAGCAGAGGGAAAAGTTCCCATAGGGATTGGACGAAACACGAAAATCAGGAACTGTATAATCGATAAGAACGCGAAAATCGGAAAAGATGTTGTCATTATGAACAAAGAGAGCATTGTGTATGCTTTAATCTGTATCTCTGTCAATTTCAGGGGGTTCAAGAAGCAGATCGGCCTGAACAGGGATTCTACATTCGATCGGGAATCACCATTATACTGGAAAAGGCAACGATCGGAGATGGCACAGTTATATGAACAGATCAAATTCCTCGGTTTGGAAGACATTTTAGAGGAGGAAAAATGGTGTGAAGTTTTCAGGAGACTGCCTGGGCTGTGGCAGGTGAAGAATGGCGTTTGCAGCATTGTGGCTGAGAGAACAAGGAGAAGAAGGAAAGCATCCACATAG 1779 43.51 MLCQLKGPMDSYSVSFKANTHLSSDLKNGFHGEKVRGSFNENGWVNRLAKTFKSDKKALKLSPNVAYAVATPNLSKQAASIQAPPFFKAKVNPKNVASIILGGGAGTQLFPLTRRSATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHISRTYFGNGVSFGEGFVEVLAATQTPGKSGMYWFQGTADAVRQFTWVFEDAKNRNVENILILAGDHMYRMDYMDFVQNHIDRNADISISCAAVGDSRASDYGVVKIDSRGRIIQFAEKPKGANLNAMRVDTTSLGLSREESLKSPYIASMGVYVFKTDILLNLLKGRYPTSNDFGSEIIPAAVKEHNVQAYIFRDYWEDIGTIKTFYDANLALTEEFPKFEFYDPKTPFYTSPRFLPPTKIDKCQIVDAIISHGCFLRECNVQHSIVGERSRLDYGVELKDTIMMGADNYQTEPEIAALLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVVIMNKESIVYALICISVNFRGFKKQIGLNRDSTFDRESPLYWKRQRSEMAQLYEQIKFLGLEDILEEEKWCEVFRRLPGLWQVKNGVCSIVAERTRRRRKAST 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4022751 4026858 + CmaCh20G008400.1 Cma20g00840 316654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00840 592 Gene3D Hexapeptide repeat proteins 394 501 - -
Cma20g00840 592 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 490 IPR029044 -
Cma20g00840 592 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 11 497 - -
Cma20g00840 592 CDD ADP_Glucose_PP 99 359 - -
Cma20g00840 592 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 84 393 IPR029044 -
Cma20g00840 592 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Cma20g00840 592 CDD LbH_G1P_AT_C 396 495 - -
Cma20g00840 592 Pfam Nucleotidyl transferase 98 374 IPR005835 GO:0009058|GO:0016779
Cma20g00840 592 SUPERFAMILY Trimeric LpxA-like enzymes 390 495 IPR011004 -
Cma20g00840 592 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 307 317 IPR005836 GO:0005978|GO:0008878
Cma20g00840 592 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 11 497 IPR011831 GO:0005978|GO:0008878
Cma20g00840 592 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 102 121 IPR005836 GO:0005978|GO:0008878
Cma20g00840 592 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 97 492 IPR011831 GO:0005978|GO:0008878
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00840 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - csv:101208904 839.336
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00833 Cma20g00840 CCT
Cma19g00833 Cma20g00840 ECH
Cma02g00387 Cma20g00840 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01686 Cma-Chr14:12543542 Cma20g00840 Cma-Chr20:4022751 0 dispersed
Cma17g00261 Cma-Chr17:1347187 Cma20g00840 Cma-Chr20:4022751 1.25E-62 dispersed
Cma17g00263 Cma-Chr17:1350939 Cma20g00840 Cma-Chr20:4022751 8.83E-137 dispersed
Cma19g00833 Cma-Chr19:7892522 Cma20g00840 Cma-Chr20:4022751 5.13E-162 dispersed
Cma01g01921 Cma-Chr1:12509775 Cma20g00840 Cma-Chr20:4022751 0 wgd
Cma02g00387 Cma-Chr2:1964800 Cma20g00840 Cma-Chr20:4022751 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g359 Blo02g00807 . . . . . . . Cmo19g00849 . Cma02g00387 Cma20g00840 . Car20g00727 Sed05g2098 . Cpe15g00669 Bhi05g01515 Tan02g0519 Cmetu01g0280 Lac12g0419 Hepe02g0330 . . Cla02g00313 Cam02g0320 Cec02g0321 Cco02g0323 Clacu02g0312 Cmu02g0311 Cre02g0643 Cone12ag1278 Cone8ag1355 . Cone10ag0975 Lsi10g00383 Csa07g00231 Chy11g00368 . Blo04g00618 . . Bda14g00659 Bpe15g00765 . . . Sed01g0294 Cmo02g00394 Cmo20g00850 . Cma19g00833 . Car19g00646 Cpe16g00250 Cpe05g01269 Bhi10g01989 Tan05g1287 Cmetu11g1343 . Hepe08g1004 . . . . . . . . . Lsi11g01326 Csa02g01275 Chy01g00549 Cme11g00128
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001022 2 5 3 5 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 2 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00840 Cma_Chr20 FPKM 4.14526 5.188487 56.522575 57.940403 8.507277 10.569039 9.764385 16.196655 15.094254 15.29244