Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00844 ATGGCTCAGAATCTCAAGGTTCTAATAATTGGTGGAACTGGTTACATCGGAAAATTCATTGTACAAGCTAGCGCCAAAGCCGGTCATCCTACCTATGCATTGATCCGCAAGTCTTCGCTCGGAAGCTCTGCCAAGTCTCAAATCATCAATCATTTCAAAAGCCTAGGGGTCAATTTTCTCTTCGGCGATCTCTTCGACAATGAGAGTTTGGTTAAGGCGATAAAGCAAGTTGATGTGGTGATATCCACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGATCCTATCTGCTATCAAACAAGCTGGCAATGTCAAGAGATTCTTTCCTACGGAGTTCGGCAACGATGCCGATCACATCGACGCGGTGGAGCCAGCAAAATCAATGTACACTGCAAAGGCTGAATTTCGTAGGGTTGTTGAGGCTGAGGGAATCCCACACACATTCGTGGTATGCAATTTCTTCGATGGTTACTTTCTTAGCAACTTGTCTCAGCCAGATGCATCCGTCCCACCTAGAGACAAAGTCGTAATCTTAGGGGATGGAACTCCCAAAGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACCATCCGAGCAATAGATGATCCAAGAACCCTCAACAAGATCATGTACATTAGACCCGCAGCCAACATCTACTCGACCAACGATCTGGTCTCGCTGTGGGAAAGAAAAATTGGCAAGACTCTTAGAAGGGTCTATGTCCCAGAGGAGGAGGTGTTGAAGAACATCCAAGAGGCCTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCACAGGTGAGGGGATCTCAAACTAACTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCGCTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTAA 927 45.74 MAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRKSSLGSSAKSQIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKRFFPTEFGNDADHIDAVEPAKSMYTAKAEFRRVVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVVILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYIRPAANIYSTNDLVSLWERKIGKTLRRVYVPEEEVLKNIQEASYPLNIELALCHTAQVRGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4043610 4045636 - CmaCh20G008440.1 Cma20g00844 316658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00844 308 Pfam NmrA-like family 7 295 IPR008030 -
Cma20g00844 308 PANTHER PINORESINOL REDUCTASE-RELATED 1 308 - -
Cma20g00844 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 267 IPR036291 -
Cma20g00844 308 Gene3D - 6 294 - -
Cma20g00844 308 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 1 308 - -
Cma20g00844 308 CDD PCBER_SDR_a 6 303 IPR045312 GO:0016491
Cma20g00844 308 Gene3D - 154 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00844 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101209800 573.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00392 Cma20g00844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00537 Cma-Chr19:6170089 Cma20g00844 Cma-Chr20:4043610 1.03E-158 dispersed
Cma20g00844 Cma-Chr20:4043610 Cma14g01643 Cma-Chr14:12287005 2.27E-06 dispersed
Cma20g00844 Cma-Chr20:4043610 Cma20g00845 Cma-Chr20:4047710 6.12E-97 tandem
Cma12g00465 Cma-Chr12:2425973 Cma20g00844 Cma-Chr20:4043610 4.56E-154 wgd
Cma02g00392 Cma-Chr2:1991994 Cma20g00844 Cma-Chr20:4043610 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00844 Cma_Chr20 FPKM 31.244722 31.562721 83.490089 85.060493 5.926626 8.334414 6.007908 54.664593 56.86031 54.080418