Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00845 ATGGAGGAGAAGAGCAAGGTTCTGATCATAGGAGCAACAGGTTTCCTAGGGTTCCATTTGGCTCAAGCCAGCTGCAATTTTTCTCACCCTACGTTTGCTCTAATAAGAGATTCTACCTCCTCTTCATCTACTAAACTAGACAAGCTCCGAGCTCTCTCCGATGCCGGAGTTCAATTCCTCAAGGGTTCTCTGGATGACGAAGCTAGCCTAATGGAAGCTGTTAATCAAGTCGATGTGGTCATTTGTGCTGTTTCGTCTAAACAGGCGTTGGACCAGAAACTTCTGATTCAAATCATCAAACAAAATGGATCCATTAAGAGGTTTATTCCATCAGAATTTGGACTTGATCCTGATAAGGTTCAAATATCAAACATGGACTATGACTTCTATGCCCGCAAAGCTGAAATTCGTCGGCTGGTAGAAGCTGAAGGCATTCCGTATACCATAATTTCTTGCAATTTTTTCATGAGTTATTTACTTCCTTCCCTTGTTCAACCAGGCATGAAAATTCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGCAATACCAAAGGTGTATTTGTGAAGGTCAGTGATGTTGCTGACTTCACAATCAGTTCGTTGGATGATCCACGCACATTGAACAAGGTAGTTTATCTAAGGCCCGAAGGGAATGTTTATTCCTTGAATGAACTGGTTGAGATTTGGGAGTGTAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTGAAGAAAATTGAAGAGACTCCTTACCCTGACAACATGCAGCTCATTTTCATATATTCTGCATTTATAAAGGGAGATCAGACGTACTTTGATATTGAGGCATCATCAAATGGTGTTGATGGTTCAAAATTATATCCACAACTCAAGCACACTACGATTAGTGAGTTTCTGGACACCCTATTGGAATGA 933 40.94 MEEKSKVLIIGATGFLGFHLAQASCNFSHPTFALIRDSTSSSSTKLDKLRALSDAGVQFLKGSLDDEASLMEAVNQVDVVICAVSSKQALDQKLLIQIIKQNGSIKRFIPSEFGLDPDKVQISNMDYDFYARKAEIRRLVEAEGIPYTIISCNFFMSYLLPSLVQPGMKIPPRDKVTIFGDGNTKGVFVKVSDVADFTISSLDDPRTLNKVVYLRPEGNVYSLNELVEIWECKIGKKLEKNYVSEEELLKKIEETPYPDNMQLIFIYSAFIKGDQTYFDIEASSNGVDGSKLYPQLKHTTISEFLDTLLE 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4047710 4050582 - CmaCh20G008450.1 Cma20g00845 316659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00845 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 279 IPR036291 -
Cma20g00845 310 Gene3D - 6 293 - -
Cma20g00845 310 Coils Coil 235 255 - -
Cma20g00845 310 Pfam NmrA-like family 7 238 IPR008030 -
Cma20g00845 310 Gene3D - 152 305 - -
Cma20g00845 310 PANTHER PINORESINOL REDUCTASE-RELATED 3 307 - -
Cma20g00845 310 CDD PCBER_SDR_a 6 304 IPR045312 GO:0016491
Cma20g00845 310 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 3 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00845 - - - cmax:111484275 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00465 Cma-Chr12:2425973 Cma20g00845 Cma-Chr20:4047710 7.99E-98 dispersed
Cma20g00844 Cma-Chr20:4043610 Cma20g00845 Cma-Chr20:4047710 6.12E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g369 . . . . . . . . . . . Cma20g00845 . . Sed04g3918 . . Bhi05g01243 Tan02g0785 Cmetu01g0437 . Hepe02g0491 . . . . . . . . . . . . . Lsi10g00377 . . . . . . . . . . . Sed05g3616 . . . . . . . . Bhi10g01997 Tan05g1295 Cmetu11g0943 . Hepe08g1010 . . . . . . . . . . Csa02g01266 . Cme11g00122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00845 Cma_Chr20 FPKM 6.959064 6.982988 7.774904 8.761144 13.415818 11.638849 12.861249 7.290517 8.745736 10.799915