Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00846 ATGGGTGGCCTTCTAGAAGCGATCAAAGCGGCTGCAAAAAGCAATTCAATCCAAAAGATCCATTTCGCCACCAACTTTTCTGATTCCGGCCACCATTTTAAATCCCCACCCACCACCGATTTCCCATCTCTCCGATTCGATTTTCAAGTTTTTGATCGTCTTGTTTTCTCTCCGATGGATACATTAGAGGAGGAAGAAGAATACAACTGGAGAGAAGTCCGGCTTCCGTCGCTGATCCCGGTAGTGCCGGAGCCAGAGCTAGAGAGAGAGACGGCGGTGAGACGTCGTGGCCGAGACATTCTCGTTGCCGTCGATCATGGTCCGAACAGCAAACACGCTTTCGATTGGGCTATAATCCATTTCTGCCGCCTTGCCGACACCATCCATCTCGTCCACGCCGTTTCCAATGTGAAGAATGAATTGGTTTATGAGTATAGTCAGGGGCTGATGGAGAAGCTTGCGGTGGAGGCCTTTGAGGTTTCCATGGTGAGGACTGTGGCAAGGATTGTGCAGGGAGATGCTGGGAGGATTATTTGCAAGGAAGCAGAGAAGTTGAAGCCTGCTGCTGTTGTTATGGGCACTAGAGGAAGAAGCTTGATTCAAAGTGTTCTGCAGGGAAGTGTGAGTGAGCATGTCTTCCACAACTGCAAATCAGCACCTGTTATTATAGTTCCTGGAAAAGTCAGACTTTGA 693 49.06 MGGLLEAIKAAAKSNSIQKIHFATNFSDSGHHFKSPPTTDFPSLRFDFQVFDRLVFSPMDTLEEEEEYNWREVRLPSLIPVVPEPELERETAVRRRGRDILVAVDHGPNSKHAFDWAIIHFCRLADTIHLVHAVSNVKNELVYEYSQGLMEKLAVEAFEVSMVRTVARIVQGDAGRIICKEAEKLKPAAVVMGTRGRSLIQSVLQGSVSEHVFHNCKSAPVIIVPGKVRL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4053476 4055838 + CmaCh20G008460.1 Cma20g00846 316660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00846 230 Pfam Universal stress protein family 98 225 IPR006016 -
Cma20g00846 230 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 59 227 - -
Cma20g00846 230 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 98 227 - -
Cma20g00846 230 CDD USP_Like 100 224 - -
Cma20g00846 230 PRINTS Universal stress protein signature 202 224 IPR006015 -
Cma20g00846 230 PRINTS Universal stress protein signature 97 115 IPR006015 -
Cma20g00846 230 PRINTS Universal stress protein signature 184 196 IPR006015 -
Cma20g00846 230 Gene3D HUPs 97 226 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00846 - - - csv:101210790 325.479
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00846 Cma-Chr20:4053476 Cma14g00104 Cma-Chr14:455403 5.48E-11 dispersed
Cma20g00846 Cma-Chr20:4053476 Cma15g00761 Cma-Chr15:3715755 5.98E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g376 . Blo15g00701 . . Bpe07g00426 . . Bma12g00508 . . . Cma20g00846 . Car20g00732 . . . . . . . . . . . . . . . . . . . Cone3ag1166 Cone10ag0967 Lsi10g00372 . Chy11g00376 . . . . . . . . . Sed01g0301 . Cmo20g00856 . . . . Cpe16g00244 . Bhi10g02006 Tan05g1301 Cmetu11g1811 . Hepe08g1013 . . . . . . . . . . Csa02g01260 . Cme11g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010475 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00846 Cma_Chr20 FPKM 35.020203 39.640614 50.699356 48.621964 30.651402 35.649441 26.469576 287.125793 317.832794 291.769592