Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00847 ATGTTCGCGGCGGAGACGACAGTGTCGGAAACACAGACGGGTCGAGTAAAATGGCGGCGAACCGACGGCGATTGCAGGAGCTTGTGCTCTGTCTCGACTCCGGCGAGCCGGGTCGAGCATTTTGAGGATCTGATGGCAGCTGGAGGTTGGCCGGAGCTGCGAAGCAATCGGAGTGGATCGAGAAACCAGAAGAGGAAAACAGAGACATCGAAACAGAGTTCAAAAGATTGTAAAGAAGTTCAAAAATTGGATTATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCCGAAAGAGCAAGGAGAGAGAAGATAAGTGTGAGAATGAAGTATTTGCAGAATTTAGTCCCTGGGTGCAACAAAATCACTGGAAAAGCTGGAATGCTCGATGAAATTATAAACTACGTTCGATCTCTACAGCAACAAGTGGAGTTCTTATCCATGAACTTGGCTGCTTTCAATCACGAATCGGATCTCGTCAATGTCCATGACCTCTTCATCGAGCAGGTGTTTCCGACGATAGAAATTTCACCTGAAACGGCTAATTACTCGTCCAACTTTAATGAACTCGAAATTGGCTCGAGCTCGAGCTCTTTAACAATCCCAGAAACTTCATTTTTCAACTCATCTTCTATTACTCATTTTGAACACTCATCAACTTGGGGAGGCGAATTACAGAGTCTTCATGGTATGAGCTTTGAAGAAGAAGGACCGCCATTGTTGTCGTCTTCAAGCTTTTTAATGCAGCAATGTTCATCCATTGAAGATGAAAATGAAACATTTCTAGACCAAAAACATGTTCCATTTTAA 825 44.73 MFAAETTVSETQTGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLMAAGGWPELRSNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERARREKISVRMKYLQNLVPGCNKITGKAGMLDEIINYVRSLQQQVEFLSMNLAAFNHESDLVNVHDLFIEQVFPTIEISPETANYSSNFNELEIGSSSSSLTIPETSFFNSSSITHFEHSSTWGGELQSLHGMSFEEEGPPLLSSSSFLMQQCSSIEDENETFLDQKHVPF 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4056892 4059201 - CmaCh20G008470.1 Cma20g00847 316661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00847 274 CDD bHLH_AtBPE_like 84 170 - -
Cma20g00847 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 144 IPR011598 GO:0046983
Cma20g00847 274 SMART finulus 100 150 IPR011598 GO:0046983
Cma20g00847 274 MobiDBLite consensus disorder prediction 50 77 - -
Cma20g00847 274 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 220 IPR024097 GO:0006355
Cma20g00847 274 Gene3D - 91 165 IPR036638 GO:0046983
Cma20g00847 274 PANTHER BHLH-TRANSCRIPTION FACTOR 56 220 - -
Cma20g00847 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 162 IPR036638 GO:0046983
Cma20g00847 274 MobiDBLite consensus disorder prediction 58 77 - -
Cma20g00847 274 Pfam Helix-loop-helix DNA-binding domain 98 145 IPR011598 GO:0046983
Cma20g00847 274 Coils Coil 141 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00847 - - - cmos:111448856 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01093 Cma-Chr11:6019057 Cma20g00847 Cma-Chr20:4056892 2.11E-57 dispersed
Cma20g00847 Cma-Chr20:4056892 Cma04g01570 Cma-Chr4:7972133 5.33E-41 dispersed
Cma02g00394 Cma-Chr2:1995000 Cma20g00847 Cma-Chr20:4056892 1.33E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g377 Blo02g00804 Blo15g00700 . Bda08g00933 Bpe07g00427 . Bma05g00457 Bma12g00509 . . . Cma20g00847 Car02g00257 . Sed05g2313 . . Bhi05g01240 Tan02g0787 Cmetu01g0279 . Hepe02g0492 . . . . . . . . . Cone12ag1155 Cone8ag1204 Cone3ag1165 . . . Chy11g00377 . . . . . . . . . . Cmo02g00400 Cmo20g00857 . . . . . Cpe05g01262 Bhi10g02007 Tan05g1302 Cmetu11g0539 . . . . . . . . . . . . Csa02g01259 . Cme11g00114
Vvi4g985 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3618 . . . Cma20g00847 . . . . Bhi10g02008 Tan05g1303 . . Hepe08g1014 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012104 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37037 PF00010 HLH 8.70E-06 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00847 Cma_Chr20 FPKM 0.0 0.35311 0.0 0.0 1.129585 0.0 0.913163 0.0 0.0 0.0