Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00849 ATGGAAAAACAGAAAGATAAACCATCAGCTGCAGCAAACCCACCCATTCCTTCCTGTAGAAAGAAGAAAAATGAAGACGGTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCATGCATCGATGGACGAACACAAATCGTGCTTCAAGAAAACTATCAACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAGTAA 267 40.82 MEKQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADRNSETSGVESSLPLRTTVSE 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4066871 4067524 + CmaCh20G008490.1 Cma20g00849 316663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00849 88 PANTHER - 3 88 - -
Cma20g00849 88 MobiDBLite consensus disorder prediction 1 25 - -
Cma20g00849 88 PANTHER DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF 3 88 - -
Cma20g00849 88 MobiDBLite consensus disorder prediction 69 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00849 - - - csv:101211034 168.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00396 Cma20g00849 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00396 Cma-Chr2:2006494 Cma20g00849 Cma-Chr20:4066871 1.17E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g599 . . Bda06g00939 Bda08g00932 . . . Bma12g00517 . . Cma02g00396 Cma20g00849 Car02g00259 Car20g00733 . . . . . . . . . . . . . . . . . . . . . Lsi10g00368 . Chy11g00378 . . . . . . . . . Sed05g3621 Cmo02g00402 Cmo20g00858 . . . . . Cpe05g01260 Bhi10g02011 Tan05g1310 Cmetu11g0117 . Hepe08g1016 . . . . . . . . . . Csa02g01256 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005499 2 1 1 2 2 1 2 1 1 0 1 1 1 1 1 2 1 1 3 1 1 1 2 0 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00849 Cma_Chr20 FPKM 4.730275 4.300109 10.514066 10.496003 4.636664 5.587554 9.65663 10.967949 14.211753 12.379061