Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00852 ATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTCGAAGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGACGTAGTATTACCGTTAATGAGGCTCAGCAAAGAGGCGGCGGTGGTGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGGCGTCGTGAAGGAGGTGGCGGTGGATACAACCGCGGCGGTGGTGGATACGGTAGTGGTGGAGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGTTACGGTGGTGGTGATGGTGGTTCCCGTTACAACCGGGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAG 516 55.23 MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRREGGGGGYNRGGGGYGSGGGGGGYGGGGYGGGRDRGYGGGDGGSRYNRGGGGGSEGGWRN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4075158 4076881 - CmaCh20G008520.1 Cma20g00852 316666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00852 171 MobiDBLite consensus disorder prediction 83 107 - -
Cma20g00852 171 MobiDBLite consensus disorder prediction 119 171 - -
Cma20g00852 171 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Cma20g00852 171 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 171 - -
Cma20g00852 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Cma20g00852 171 Gene3D - 2 109 IPR012677 -
Cma20g00852 171 PANTHER GEO13361P1-RELATED 1 171 - -
Cma20g00852 171 SMART rrm1_1 9 82 IPR000504 GO:0003723
Cma20g00852 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00852 - - K13195 cmax:111499534 168.703
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00400 Cma20g00852 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00852 Cma-Chr20:4075158 Cma10g00295 Cma-Chr10:1336031 1.56E-24 dispersed
Cma02g00400 Cma-Chr2:2018144 Cma20g00852 Cma-Chr20:4075158 1.55E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00852 Cma_Chr20 FPKM 156.91188 158.469223 241.973129 238.79071 177.94162 170.678436 204.839386 301.706055 333.056976 371.740143