Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00855 ATGTCTGCCGGGGGAAGTGTTGTGGTTAAGAATAACTTACTAGGCTTTTCATGTTTGTGTAAATTAATACATTTAGTGGCATACCGGCCTCCATTGTTGGAGCTGAAGATTTACAGGCACAACATGAATGTAGCGAAACAGAGGAAGGCGCTGTGCCTGAAAAATCTTGGAAAAAATGGCTGGAATTTCAACTCCATGGAAGGAGACAGAATTTTCCTTAACCTCCTTCTGCAGGCGGCGATCTGGAGCCAACGAACCACCAAATTAAGCCGGAAAACAAGAACTGCGGCCGGCGTCGTCTGGGAGGACCGGCGAGAGTTTCTCCGGCGCCATTCAACGACTAGTCTTTTGCCGGAAACTCTTCTAATGTCTTCTTCATCGGATTCTCCCTCGCCTACTTCGGATTCCTCGTCGCCTCCGCCATCTGATTCTTCTCCGCCTCCGCCGTCTGGTTCTTCTCCGCCTCCGCCGTCTGGTTCTTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGAACGATTCTCCTCCACCTCCGCCGGACGCATCGCCGCCGCCGCCGCCGCCTCCTGATTCCTCTTCTTCACCCCGACCGCCATCACGGAAAGACTCGAAATCTTCATCTCCTCCATCTCCTCCGCCGCCGCACGGTTCCTCTAGGCATTCTCCTCCGCCTCCTCCGAAATCGATTTCGCATCACTCTCGATCCGCAAACTCCTCATCCGGCGGCTCTAAAGCCGATGCGTTGCCGATCTTTACAGGACTGGCGGTGGCGGTAGGATTTATGCTACTCGCCGTGGTTTTAATGTTCTTCGCTTGCAGGCGAAAGAAACAGAACAAAAATAGTGATTCCATGGGCTTCGATGAACCGTCTTCTCCGAGAAGTGGGGATCCATATTACATGAGAATGAATTACAACTGGAACAACCCGAACGAACACGTCGTGAACATAACGCCAGTCGGCGGCGGAGGGCAAGGAGGAGAATGGCCGCAGCCGCCGCCTCCGCCGCCGACTCCTCCGCCGTTGGGAATAGTTAGCAGTGATATGAGTTCGAATAACTCGGGGCCACACGGGCCGGTGTTTCCGCCGCCTCACCCGTCGGTGGCGCTAGGGTTCAATAAGTGCACGTTCACATTCGACGAGCTGATGGCGGCGACGGGGGGATTCTCTCCGGCGAACCTGTTAGGGCAAGGGGGATTCGGGTACGTTCACAAAGGAGTTTTGCCTAACGGCAAGGAAATTGCAGTGAAGAGCCTGAAATCGGGAAGTGGTCAAGGAGGTCGGGAATTCGCGGCGGAAGTGGAGATAATTAGCCGCGTTCACCACCGCCATTTGGTGTCGTTAATCGGACATTGCATCGCCGGTGAACGGAAGTTGTTGGTTTACGAATTTGTCCCTAATAACAACCTCCAATTCCACCTTCGCGGCAAGGGGCAGTCACCGTTGGACTGGCCAACCAGGGTGAAGATAGCATTGGGCTCAGCCAAGGGCCTCGCCTATCTACACGAAGACTGTCATCCTCGCATCATCCACCGAGATATCAAGACTGCGAATATTCTCATAGACATGAGTTTTGAAGCCAAGGTGGCTGATTTTGGATTGGTGAAGCTCAACCAAGACAACGACACTCATATATCGACTCGTGTCATGGGCACATTTGGATATTTAGCTCCGGAATATGCATCATCGGGAAAGCTAACAGAGAAATCAGATGTATTCTCATTCGGAGTAGTGCTTTTAGAACTGATAACGGGAAGGCGACCGATGGACACGATGGGAGAGTTCATGGAGGAAAGCTTAGTAGATTGGGCGAGGCCTCTATGCATGCAAGCAATGAAGAATGCAAACTATGAGGTGCTGGCTGATTCACGGTTGGAGAAGAAGTACGCCGCCCCCGAAATGGGCTGCATGGTCGCTTGCGCCTCCGCTTGCATCCGTCATTCGGCTCGACGTCGTCCCAAAATGAGTCAGGTGGTGAGGGCTCTAGAAGGCGACGTGTCACTAGAGGATATGAGCGATGGAGTAAAGGCAGGGCAGAGCTCGTACTTCGGCTCAGGCACGACCTCGGAGAACGATGGAAGCTCCGATACCGCCGACGTGAAGAGGCTCCAAAAGAAAGCGAAGGACAGCCGGGAGGAAATAAGCAGCGATTGCGGCGGCACTAGCGAGTACGGACTAAACCCTTCGGCAACAAGCGGCGAGATCAGCTTGAAGCCCGGCCGCCAGTCATCCCCAAACCTTCTTCTTCTTCCTTTCGTTCACCTTCGTCTTGGATCTCACTTCCACAGCTTTTCCCCATTTCAATCCCACCCTTGGACGAAATTTCCCTGCAACTCTCTTCCATTCCGATCTCTCACCTGTTCTTCTGACTCTTCCGCCATGGCTCAGCCTCTCGTCAAGAAGGATGATGACTACGACGATGAAGAGGAATATTCTCCGTTTTTGGGGATTGAGAAAGGTACCGTTCTTCAGGAAGCAAGGGTGTTCAATGATCCTCAGCTAGACACAAGGAAATGCTCCCAGGTCATAACGAAGCTTTTGTATCTTCTCAACCAAGGTGAAACATTCACAAAGGTTGAAGCTACAGAAGTTTTCTTTGGTGTGACTAAGCTCTTCCAGTCTAGAGACATAGAATTGAGGAGAATGGTTTATTTAATGATAAAGGAGCTCTCTCCATCTTCTGATGATGTTATTATTGTGACAAGCTCCCTGATGAAGGACATGAACAGCAAGAATGATATGTACCGTGCTAATGCTATACGTGTACTTTGTAGAATTACAGACGGTACTCTTCTCACCCAGATTGAGCGGTATCTGAAACAAGCAATTGTAGACAAAAACCCAGTGGTTGCTAGTGCAGCCTTAGTCAGTGGGATTCATTTACTCCAGACAAATCCTGAGATTGTGAAGCGATGGAGTAATGAGGTCCAAGAAGCTGTGCAGTCAAGGGCACCACTAGTACAATTTCATGCCTTGGGTTTGCTTCATCAGATCCGCCAGAATGATCGTCTAGCTGTTAACAAGTTGGTTAGTAGCTTGACACGGGGCACTGCTCGCTCTCCTCTGGCACAATGCCTTTTGGTTCGTTATGCCAGTCAGGTTGCTAGTGAGTCTGCTAATAGTCAAACTGGGGAACGACCTTTATATGATTTTCTTGAAAGTTGTCTGCGACACAAATCAGAGATGGTCATCCTTGAGGCTGCCAGAGCTATTGCAGAACTAAATGGCGTGACAAGCAGAGAAGTTACTCCAGCAATTACTGTACTTCAGCTCTTTTTGAACTCTCCCAAGCCAGTATTGAGATTTGCTGCCATCCGTACTCTGAACAAGGTGGCAATGACACATCCAATGGCTGTCACCAATTGTAACATTGATATGGAGAGTTTGATTTCAGACCAGAACAGAAGCATCGCAACTCTTGCAATAACTACACTTCTAAAGACTGGAAATGAGTCAAGTGTGGATCGCCTGATGAAGCAAATAACAAATTTTATGTCAGATATTGCTGATGAATTTAAAATTGTAGTTGTGGATGCCATCAGGTCACTGTGTTTGAAGTTTCCATTGAAGTACAGATCTTTGATGAACTTCCTATGCAACATTCTCAGAGAAGAAGGTGGATTTGAATACAAAAAGGTGATAGTTGATTCAATTGTGATCCTTATCAGAGATATCCCTGAAGCTAAAGAAAATGGCTTGCTTCATTTGTGTGAGTTCATAGAAGACTGTGAATTCACTTATCTTTCTACACAGATACTTCACTTTTTGGGAATTGAAGGTCCAAAAGCCTCAGATCCTAGCAAGTATATACGTTATATATATAATCGAGTACATCTTGAGAATGCAACTGTTCGAGCCTGTGCTGTGAGCACTTTGGCGAAGTTTGCTGTCATGGTTGATTCATTGAAGCCCCGAATATATGTTCTCCTTCGACGATGCCTTTTTGATAGTGATGATGAGGTTCGTGATAGGGCAACCCTTTATCTTAAGACACTTGGAGCAGAAGGCTCAATTGTTGAAAATGAGGAAGACGTGCAAGAAATTCTTTTTGGCTCTCTAGACTTGCCACTGAGCAATCTAGAGACCAGTTTGAAAAATTATGAACCTTCTGAAGAACCTTTTCATCTTGATTCTGTATCTAAGGAGATCAAATCCCAGCCACTTGCTGAGAAGAAGGGTAGTGGTAAAAAATCGAAAGGGCTTGGTGTTCCTCCCACTACCCTTACTTCTTCTGTCGATGCTTATGAAAAGATGCTTCGTTCCATTGAAGAATTCTCCGACTTTGGGAAGCTTTTCAAGTCATCAGCTTCCATGGAGCTTACAGAAGCAGAAACAGAGTATGCTGTCAATGTTGTCAAGCATATTTTTGATAGACACGTTGTCTTTCAATATAACTGCACAAATACAATTCCTGAGCAGCTACTAGAAAATGTCAATGTTATTGTGGATGCCTCAGAAGCAGAGGAATTCTCGGAAGTAGTATCCAAGCCACTTAGATCTCTTCCTTACAATACACCTGGGCAAACCTTTGTGGCATTTGAGAAGCCAGATGGAGTCGCCGCTGTTGGGAAGTTCTCAAATATGTTGAAGTTCATTGTCAAAGAGATTGATCCATCTACTGGCGAGGCAGAGGACGATGGCGTTGAAGATGAATACCAGCTTGAGGACGTCGAGGTGGTTGCAGCAGACTACATGTTGAAAGTAGTAGTTTCTAACTTCAAGAATGCATGGGAAAGCGTAGGTGAAGATGGTGAACGAGTAGATGAATATGGATTAGGCCCAAGAGGGAGCTTGGCTGAAGCTGTGCGAGCTGTCGTAGACCTTCTCGGCATGCAGCCTTGTGAGGGAACAGAAGTTGTCCCTAGCAATCTGCGGTCACACACATGTTTACTATCTGGTGTATTCATTGGCAACGTTAGAGTTCTCGCCCGTCTGTCATTTGGTCTCGATGCTTCAAGGGAGGTAGCAATGAAGCTGGTTGTTAGATCCGACGACGAAACAGTCAGTGATCTCATTCACGAGATTATCTCCAGCGGCTAA 5043 47.87 MSAGGSVVVKNNLLGFSCLCKLIHLVAYRPPLLELKIYRHNMNVAKQRKALCLKNLGKNGWNFNSMEGDRIFLNLLLQAAIWSQRTTKLSRKTRTAAGVVWEDRREFLRRHSTTSLLPETLLMSSSSDSPSPTSDSSSPPPSDSSPPPPSGSSPPPPSGSSPPPPSGSSPPPPNDSPPPPPDASPPPPPPPDSSSSPRPPSRKDSKSSSPPSPPPPHGSSRHSPPPPPKSISHHSRSANSSSGGSKADALPIFTGLAVAVGFMLLAVVLMFFACRRKKQNKNSDSMGFDEPSSPRSGDPYYMRMNYNWNNPNEHVVNITPVGGGGQGGEWPQPPPPPPTPPPLGIVSSDMSSNNSGPHGPVFPPPHPSVALGFNKCTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKSGSGQGGREFAAEVEIISRVHHRHLVSLIGHCIAGERKLLVYEFVPNNNLQFHLRGKGQSPLDWPTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLVKLNQDNDTHISTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVVLLELITGRRPMDTMGEFMEESLVDWARPLCMQAMKNANYEVLADSRLEKKYAAPEMGCMVACASACIRHSARRRPKMSQVVRALEGDVSLEDMSDGVKAGQSSYFGSGTTSENDGSSDTADVKRLQKKAKDSREEISSDCGGTSEYGLNPSATSGEISLKPGRQSSPNLLLLPFVHLRLGSHFHSFSPFQSHPWTKFPCNSLPFRSLTCSSDSSAMAQPLVKKDDDYDDEEEYSPFLGIEKGTVLQEARVFNDPQLDTRKCSQVITKLLYLLNQGETFTKVEATEVFFGVTKLFQSRDIELRRMVYLMIKELSPSSDDVIIVTSSLMKDMNSKNDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAPLVQFHALGLLHQIRQNDRLAVNKLVSSLTRGTARSPLAQCLLVRYASQVASESANSQTGERPLYDFLESCLRHKSEMVILEAARAIAELNGVTSREVTPAITVLQLFLNSPKPVLRFAAIRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVDAIRSLCLKFPLKYRSLMNFLCNILREEGGFEYKKVIVDSIVILIRDIPEAKENGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKASDPSKYIRYIYNRVHLENATVRACAVSTLAKFAVMVDSLKPRIYVLLRRCLFDSDDEVRDRATLYLKTLGAEGSIVENEEDVQEILFGSLDLPLSNLETSLKNYEPSEEPFHLDSVSKEIKSQPLAEKKGSGKKSKGLGVPPTTLTSSVDAYEKMLRSIEEFSDFGKLFKSSASMELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVNVIVDASEAEEFSEVVSKPLRSLPYNTPGQTFVAFEKPDGVAAVGKFSNMLKFIVKEIDPSTGEAEDDGVEDEYQLEDVEVVAADYMLKVVVSNFKNAWESVGEDGERVDEYGLGPRGSLAEAVRAVVDLLGMQPCEGTEVVPSNLRSHTCLLSGVFIGNVRVLARLSFGLDASREVAMKLVVRSDDETVSDLIHEIISSG 1680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4104105 4121764 - CmaCh20G008550.1 Cma20g00855 316669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00855 1680 ProSiteProfiles Protein kinase domain profile. 390 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00855 1680 Pfam Coatomer gamma subunit appendage platform subdomain 1415 1560 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Cma20g00855 1680 MobiDBLite consensus disorder prediction 696 717 - -
Cma20g00855 1680 PANTHER COATOMER SUBUNIT GAMMA 795 1680 IPR017106 -
Cma20g00855 1680 CDD STKc_IRAK 396 665 - -
Cma20g00855 1680 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 1565 1676 IPR009028 GO:0006886|GO:0016192|GO:0030117
Cma20g00855 1680 MobiDBLite consensus disorder prediction 680 739 - -
Cma20g00855 1680 Gene3D - 817 1109 IPR011989 -
Cma20g00855 1680 SUPERFAMILY Protein kinase-like (PK-like) 370 663 IPR011009 -
Cma20g00855 1680 MobiDBLite consensus disorder prediction 118 133 - -
Cma20g00855 1680 MobiDBLite consensus disorder prediction 118 246 - -
Cma20g00855 1680 MobiDBLite consensus disorder prediction 134 197 - -
Cma20g00855 1680 SUPERFAMILY Clathrin adaptor appendage domain 1411 1564 IPR013041 -
Cma20g00855 1680 SMART serkin_6 390 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00855 1680 Gene3D Phosphorylase Kinase; domain 1 367 465 - -
Cma20g00855 1680 Gene3D Coatomer, gamma subunit, appendage domain 1408 1561 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Cma20g00855 1680 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 1563 1677 IPR032154 -
Cma20g00855 1680 SUPERFAMILY ARM repeat 819 1383 IPR016024 -
Cma20g00855 1680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Cma20g00855 1680 MobiDBLite consensus disorder prediction 232 246 - -
Cma20g00855 1680 MobiDBLite consensus disorder prediction 680 695 - -
Cma20g00855 1680 MobiDBLite consensus disorder prediction 721 739 - -
Cma20g00855 1680 Gene3D Transferase(Phosphotransferase) domain 1 466 678 - -
Cma20g00855 1680 Pfam Adaptin N terminal region 820 1333 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cma20g00855 1680 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Cma20g00855 1680 MobiDBLite consensus disorder prediction 204 231 - -
Cma20g00855 1680 Pfam Protein tyrosine and serine/threonine kinase 395 663 IPR001245 GO:0004672|GO:0006468
Cma20g00855 1680 PANTHER COATOMER SUBUNIT GAMMA 795 1680 - -
Cma20g00855 1680 Gene3D - 1562 1678 IPR012295 -
Cma20g00855 1680 MobiDBLite consensus disorder prediction 320 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00405 Cma20g00855 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00611 Cma-Chr11:2924930 Cma20g00855 Cma-Chr20:4104105 3.78E-161 dispersed
Cma11g01102 Cma-Chr11:6101791 Cma20g00855 Cma-Chr20:4104105 0 dispersed
Cma15g01240 Cma-Chr15:7856949 Cma20g00855 Cma-Chr20:4104105 3.78E-16 dispersed
Cma20g00855 Cma-Chr20:4104105 Cma12g01250 Cma-Chr12:9778780 3.44E-162 dispersed
Cma02g00405 Cma-Chr2:2049807 Cma20g00855 Cma-Chr20:4104105 0 transposed
Cma04g00778 Cma-Chr4:3963160 Cma20g00855 Cma-Chr20:4104105 7.84E-162 transposed
Cma19g00660 Cma-Chr19:6950096 Cma20g00855 Cma-Chr20:4104105 0 wgd
Cma02g00404 Cma-Chr2:2040301 Cma20g00855 Cma-Chr20:4104105 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69400 PF01602 Adaptin_N 7.40E-130 CL0020 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00855 K17267 - csv:101213217 1638.62