Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00866 ATGGGCAATCGAGGATTGGCAATCCTAGGTATTTTTAACTCTTTACTCTTTGTTTATCAAGTTTGTCTCAGGTTGAATATATTGTCTTCGGCTGAGCTATATTTTGAAAGAGAATTATCTTTAAGTTTCACGTTCTTTACTTTTGAAAATCCGCAAATTGCGGAGCCGGAGAAAGCACCGCCCATGGAAGAAGACAGCATAGATATGGTTCTGGCCAGAGCCACCGACCTCCGATTGAAGATCAGCAACTGCATTCACAATGCAACAACCACTGCTAGAACGGGAAATGAAGCCGCTGACGACGGCGGTTCCGCCTCCAAAACTCTGGTCGGAGATACGGAGGACGATGAAGAAGTAGAACGACTTTTGAGTGTCTGCGATGCTCTCGAGTCCTTGGAGACTCAGCTCTCCTCGTTGCAGGATTTACAACAACAACAGCGATACGAACGGGAAGCTGCCCTCAGCGAGATCGAACACAACCGCAAGATGCTACTTGACAAGCTCAAGGAGTACAAAGGGGAGCATTTGGATGTGATAAATGAAGCTTCTGCCTTTGCTGGGGAGGCAGTAAAGAACAACCATGACTTCATGCTTCCTCCATACCCAAGCCGTCTTCCATTCCCTCTCCACCTAAACAATGGCCATTTATTACCATCCTTGTCTGCTCGCAAAGCTGCCCATAATGGGGTAGCCTTAAGCTACATGAAAAATGACATGGAAAGGGAGTCAAGCGAGTCGTTGACGACCAGCAAACAAGCAAGCATGAGAAACTCAAGGAGGAACGGGTTCGGTTCACTCGTAGCTGCAGCAGCCAAGGCAGTGTTCACCATTGTTGGTGTTGTGTCCATAATGAGCATGTCTGGTTTCGGGCCACGAATCGTAGTAAAAAGAGCTACTACTCATTTGAAGAAATCCAGTGCGATCGAACAGCCATCGACAGAAGACGAGAGACCGAGAACTCGGTGCCCGCCGGGGAAAATCCTGGTTGTGGAAGACGGTGAGGAGAGGTGTTTGGTGAAAGAGAGAATTGAAGTTCCATTTTCTTCTGCTGTGGTAAAACCAGATGTGAACTATGGATGTGGTTAA 1086 47.33 MGNRGLAILGIFNSLLFVYQVCLRLNILSSAELYFERELSLSFTFFTFENPQIAEPEKAPPMEEDSIDMVLARATDLRLKISNCIHNATTTARTGNEAADDGGSASKTLVGDTEDDEEVERLLSVCDALESLETQLSSLQDLQQQQRYEREAALSEIEHNRKMLLDKLKEYKGEHLDVINEASAFAGEAVKNNHDFMLPPYPSRLPFPLHLNNGHLLPSLSARKAAHNGVALSYMKNDMERESSESLTTSKQASMRNSRRNGFGSLVAAAAKAVFTIVGVVSIMSMSGFGPRIVVKRATTHLKKSSAIEQPSTEDERPRTRCPPGKILVVEDGEERCLVKERIEVPFSSAVVKPDVNYGCG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4155344 4161641 - CmaCh20G008660.1 Cma20g00866 316680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00866 361 PANTHER PLASTID DIVISION PROTEIN PDV2 62 361 - -
Cma20g00866 361 PANTHER PLASTID DIVISION PROTEIN PDV2 62 361 IPR038939 GO:0010020
Cma20g00866 361 Coils Coil 154 174 - -
Cma20g00866 361 MobiDBLite consensus disorder prediction 94 115 - -
Cma20g00866 361 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00866 - - - bhj:120089136 434.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00642 Cma20g00866 CCT
Cma11g01782 Cma20g00866 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01782 Cma-Chr11:11921966 Cma20g00866 Cma-Chr20:4155344 1.62E-66 dispersed
Cma19g00642 Cma-Chr19:6828123 Cma20g00866 Cma-Chr20:4155344 1.62E-56 dispersed
Cma02g00419 Cma-Chr2:2125252 Cma20g00866 Cma-Chr20:4155344 3.39E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002686 2 2 1 2 1 2 4 2 2 2 0 1 3 1 2 3 2 2 4 2 2 2 1 2 2 2 1 3 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00866 Cma_Chr20 FPKM 13.972995 14.253983 12.421943 14.459735 18.91567 22.227503 16.585381 18.042326 16.215937 16.598976