Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00867 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTCCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAGGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTCAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGCGCTCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTTCATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAATGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAAGGAATCTATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTACATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACGAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAATGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATAATACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATTCCGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCCGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1770 43.5 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGPATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKGHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANNTDKYLPSDCGTSGGLSERNRLSSLNSDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4161716 4165805 - CmaCh20G008670.1 Cma20g00867 316681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00867 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cma20g00867 589 Gene3D - 248 496 - -
Cma20g00867 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cma20g00867 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cma20g00867 589 SUPERFAMILY RING/U-box 191 259 - -
Cma20g00867 589 SMART ibrneu5 190 252 IPR002867 -
Cma20g00867 589 SMART ibrneu5 260 325 IPR002867 -
Cma20g00867 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cma20g00867 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cma20g00867 589 Pfam Ariadne domain 329 589 IPR045840 -
Cma20g00867 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cma20g00867 589 SUPERFAMILY RING/U-box 114 202 - -
Cma20g00867 589 SUPERFAMILY RING/U-box 260 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00867 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1127.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00211 Cma-Chr8:1184895 Cma20g00867 Cma-Chr20:4161716 9.44E-61 dispersed
Cma17g00596 Cma-Chr17:4947053 Cma20g00867 Cma-Chr20:4161716 6.17E-62 dispersed
Cma20g00867 Cma-Chr20:4161716 Cma04g00842 Cma-Chr4:4327905 6.20E-13 dispersed
Cma02g00420 Cma-Chr2:2129241 Cma20g00867 Cma-Chr20:4161716 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00420 . 164 590 ARIADNE family AT4G34370 71.6 2.6e-182 635.6
Cma20g00867 . 164 589 ARIADNE family AT4G34370 71.8 2.2e-181 632.5
Cma02g00420 . 58 527 ARIADNE family AT2G16090 78.2 1.2e-223 773.1
Cma20g00867 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-222 768.8
Cma20g00867 . 38 543 ARIADNE family AT3G27710 61.8 1.3e-183 640.2
Cma02g00420 . 36 522 ARIADNE family AT3G27710 62.4 8.7e-183 637.5
Cma02g00420 . 47 522 ARIADNE family AT3G27720 54.4 7.3e-144 508.1
Cma20g00867 . 44 522 ARIADNE family AT3G27720 53.6 8.9e-142 501.1
Cma12g00993 . 26 542 ARIADNE family AT1G05890 65.5 4.0e-221 765.0
Cma08g00211 . 56 524 ARIADNE family AT1G05890 73.6 1.3e-216 750.0
Cma17g00596 . 1 577 ARIADNE family AT1G05890 62.4 2.3e-213 739.2
Cma12g00993 . 26 576 ARIADNE family AT1G65430 75.0 6.4e-253 870.5
Cma08g00211 . 16 583 ARIADNE family AT1G65430 69.7 2.1e-243 839.0
Cma17g00596 . 16 631 ARIADNE family AT1G65430 64.3 2.5e-236 815.5
Cma12g00993 . 24 461 ARIADNE family AT2G31780 55.3 3.4e-148 522.3
Cma08g00211 . 53 449 ARIADNE family AT2G31780 57.6 1.5e-143 506.9
Cma17g00596 . 86 496 ARIADNE family AT2G31780 55.7 4.9e-139 491.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00867 Cma_Chr20 FPKM 16.978531 16.994701 14.822909 15.747602 9.6593 8.180182 9.054818 19.553991 22.072092 20.642706