Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00867 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTCCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAGGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTCAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGCGCTCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTTCATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAATGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAAGGAATCTATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTACATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACGAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAATGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATAATACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATTCCGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCCGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1770 43.5 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGPATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKGHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANNTDKYLPSDCGTSGGLSERNRLSSLNSDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4161716 4165805 - CmaCh20G008670.1 Cma20g00867 316681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00867 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cma20g00867 589 Gene3D - 248 496 - -
Cma20g00867 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cma20g00867 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cma20g00867 589 SUPERFAMILY RING/U-box 191 259 - -
Cma20g00867 589 SMART ibrneu5 190 252 IPR002867 -
Cma20g00867 589 SMART ibrneu5 260 325 IPR002867 -
Cma20g00867 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cma20g00867 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cma20g00867 589 Pfam Ariadne domain 329 589 IPR045840 -
Cma20g00867 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cma20g00867 589 SUPERFAMILY RING/U-box 114 202 - -
Cma20g00867 589 SUPERFAMILY RING/U-box 260 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00211 Cma-Chr8:1184895 Cma20g00867 Cma-Chr20:4161716 9.44E-61 dispersed
Cma17g00596 Cma-Chr17:4947053 Cma20g00867 Cma-Chr20:4161716 6.17E-62 dispersed
Cma20g00867 Cma-Chr20:4161716 Cma04g00842 Cma-Chr4:4327905 6.20E-13 dispersed
Cma02g00420 Cma-Chr2:2129241 Cma20g00867 Cma-Chr20:4161716 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00867 K11968 - csv:101205066 1127.08