Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00871 ATGTCGAAATCCGTGGTCTTCTTTACGCTAATCGCTGTTCTTCCATTTCTCTGCGGCGCCTTCTCCCCCGAGAATCCAACAGATCGTAAAATCCTCGTTTTACTCGATGACTTTGCCATCAAATCTTCCCACTCTTTGTTCTTCAAGTCCCTTCAATCTCGAGGTTTCGACCTCGATTTCAAGCTCGCTGATGACCCTAAGATCGCCTTGCAGAGATATGGACGCTATTTCTATGACGCATTGATCTTGTTTGCGCCAACAATTGAACGTTTTGGAGGATCCATCGATCCTGCTGCTGTACTGGATTTTGTTGATTCGGGCCATGATCTAATTCTTGCTGCTGATTCTAATGGATCTGAGTTAATCCGAGCAATTGCCACTGAATGTGGTGTTGATTTTGATGAGGATCCAGCTGCTGTAGTGATCGACCACACAGGCTATGCGGTATCAGAGACCGAGGGTGATCACACATTGATTGCAAGTGATGAGTTGATCGAGTCTGATGTTATTGTGGGAAGCCGGAAAATTGAGGCTCCTATACTTTTCCAGGGGATCGCCCATACTTTAAATCCTGCCAATAGTTTGGTGCTAAAAGCTCTCTCAGCATTTCCCTCAGCTTATTCTGCCAACCCAAAGTCCAAGCTTTCAAGTCCTCCACAACTAACAGGATCTGCTATCTCTCTGGTTTCGGTCATTCAGGCGAGAAACAATGCCCGGATTTTGATATCTGGATCATTAAGTTTGTTTAGCAACCGATTTTTTAAATCTGGGGTGCAGAAGGCTGGAAGTCCAACAAGGTATGCTAAGTCAGGCAACGAGCAGTTTTCAATTGCACTAAGCAACTGGGTTTTCCATGAGAGAGGTCATCTTAAGGCTGTGAATGTTAGGCACCACAAAGTTGGGGAAGCTGATGAACCAGCAATGTACAGGATTAATGATGAATTGGAATATTCAGTTGAGATTTACGAGTGGTCGGGTAAGGCGTGGGAGCCATATGTCACTGATGATGTTCAAGTGCAGTTTTACATGATGAGCCCCTATGTTCTAAAAACTTTATCAACCGACAACAAGGGTCGTTATCATACCGCCTTCAAAGTTCCAGATGTATACGGAGTATTCCAGTTCAAGGTCGAGTATCAAAAACTTGGCTACACTACCTTATCTCTATCCAAGCAGATTCCAGTGAGACCCTTTAGGCACAATGAATATGAAAGATTCATTCCCACAGCTTATCCATACTACGGATCAGCATTTTCAATGATGGCTGGCTTCTTCATCTTCACTATTGTTCATTTATACAACAAGTAA 1308 43.73 MSKSVVFFTLIAVLPFLCGAFSPENPTDRKILVLLDDFAIKSSHSLFFKSLQSRGFDLDFKLADDPKIALQRYGRYFYDALILFAPTIERFGGSIDPAAVLDFVDSGHDLILAADSNGSELIRAIATECGVDFDEDPAAVVIDHTGYAVSETEGDHTLIASDELIESDVIVGSRKIEAPILFQGIAHTLNPANSLVLKALSAFPSAYSANPKSKLSSPPQLTGSAISLVSVIQARNNARILISGSLSLFSNRFFKSGVQKAGSPTRYAKSGNEQFSIALSNWVFHERGHLKAVNVRHHKVGEADEPAMYRINDELEYSVEIYEWSGKAWEPYVTDDVQVQFYMMSPYVLKTLSTDNKGRYHTAFKVPDVYGVFQFKVEYQKLGYTTLSLSKQIPVRPFRHNEYERFIPTAYPYYGSAFSMMAGFFIFTIVHLYNK 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4172857 4177499 - CmaCh20G008710.1 Cma20g00871 316685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00871 435 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 1 435 - -
Cma20g00871 435 Pfam Oligosaccharyltransferase 48 kDa subunit beta 30 435 IPR005013 GO:0005789|GO:0018279
Cma20g00871 435 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 1 435 IPR005013 GO:0005789|GO:0018279
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00871 K12670 WBP1; oligosaccharyltransferase complex subunit beta - csv:101209991 808.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00422 Cma-Chr2:2139252 Cma20g00871 Cma-Chr20:4172857 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0317 . . . Cma20g00871 . . . . Bhi10g02052 Tan05g1354 Cmetu11g2314 . Hepe08g1041 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005584 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00871 Cma_Chr20 FPKM 56.938221 57.050838 55.38438 55.941048 57.01722 55.928932 59.666229 95.280533 91.35611 97.979912