Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00873 ATGAAAGCTCGATCTGAGAACGGATGGCATTGCATCAAGTCTCTTCACTTTCGAGGTAAACCAGCCAGTGATTTGTGCTTGTTGGAGAAGGTGAAGACCTCTGCCGGTACTCCAGGCGAAGCGCCGGTTTATCTCAATGTGTATGACTTAACACCCGCAAATGGCTATGTCTACTGGGCTGGCCTCGGTATATTTCACTCTGGTGTTGAAGTTTACGGCATCGAATATGCCTTCGGAGCCCACGACTACCCGACAAGTGGCATCTTTGAGGTCGAACCTCGAACATGCCCCGGCTTCAAGTTTAGGAAGTCAATTTATATCGGTACGACTTGCTTAGACCCAATCCAAGTTAGAGACTTCATGGAACGTCAAGCTGCAAACTATCACGGCAGTTCATATCACTTGATCGTGAAGAATTGCAACCATTTCTGCGAGGATATATGCAGAAAACTAACCGGAAAATGCATACCGAAATGGATTAATCGGCTTGCAAGGATAGGTTCAAAATGCAACTGCATACTCCCCAAGGCACTTAAGGCGACAACCATGGAACACGACCCGAGCTTCGAAGGACAGGACAGCGAAAAGAAACGGCTAAGAAGCGGGCTGCCTACCTCCATGGGAGCTGAAAAGATCCAAAAGTTGGTCATTCAAGTAAGGAGAAGACGACCGACCTACCTACCCCGACGATCCGAGCTAGCTGACAAGTTTCTTATTCCAGCTTTCGAGATAATAGCCATGGGAGCTAACCGGTATGAGCTTTGTTTCTGA 771 47.73 MKARSENGWHCIKSLHFRGKPASDLCLLEKVKTSAGTPGEAPVYLNVYDLTPANGYVYWAGLGIFHSGVEVYGIEYAFGAHDYPTSGIFEVEPRTCPGFKFRKSIYIGTTCLDPIQVRDFMERQAANYHGSSYHLIVKNCNHFCEDICRKLTGKCIPKWINRLARIGSKCNCILPKALKATTMEHDPSFEGQDSEKKRLRSGLPTSMGAEKIQKLVIQVRRRRPTYLPRRSELADKFLIPAFEIIAMGANRYELCF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4181204 4182490 + CmaCh20G008730.1 Cma20g00873 316687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00873 256 Pfam PPPDE putative peptidase domain 42 177 IPR008580 GO:0008233
Cma20g00873 256 SMART DUF862_2a 41 179 IPR008580 GO:0008233
Cma20g00873 256 MobiDBLite consensus disorder prediction 184 203 - -
Cma20g00873 256 Gene3D PPPDE domains 37 196 IPR042266 -
Cma20g00873 256 PANTHER DESI-LIKE PROTEIN 3 203 - -
Cma20g00873 256 MobiDBLite consensus disorder prediction 186 200 - -
Cma20g00873 256 PANTHER DESUMOYLATING ISOPEPTIDASE 3 203 IPR008580 GO:0008233
Cma20g00873 256 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00873 - - K22763 csv:101211519 418.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01259 Cma-Chr11:8458435 Cma20g00873 Cma-Chr20:4181204 4.39E-107 dispersed
Cma15g01100 Cma-Chr15:6996026 Cma20g00873 Cma-Chr20:4181204 5.89E-73 dispersed
Cma17g00890 Cma-Chr17:6770554 Cma20g00873 Cma-Chr20:4181204 2.54E-68 dispersed
Cma20g00873 Cma-Chr20:4181204 Cma09g00423 Cma-Chr9:1840056 6.45E-73 dispersed
Cma12g00485 Cma-Chr12:2526463 Cma20g00873 Cma-Chr20:4181204 1.24E-93 wgd
Cma02g00424 Cma-Chr2:2146935 Cma20g00873 Cma-Chr20:4181204 2.79E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0943 Cone1ag1702 . . Lsi01g00707 . Chy07g01304 . . . . . . . . . . . . . Cma20g00873 . Car05g00767 . . . . . . . . . Cla03g01012 Cam03g1066 Cec03g1062 Cco03g1057 Clacu03g1036 Cmu03g1626 Cre03g1328 Lsi06g00689 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00873 Cma_Chr20 FPKM 14.753567 14.12763 4.56773 4.54845 17.177311 18.892012 15.016724 15.006216 15.236358 15.678668