Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00876 ATGTCGACCGCCCCTTCTCCATCTCCATCTCCTTCTCCTTCCCCTTCCACCTCCTCCTCCTCCTCCTCCGCCGCCGCCGTCAATTTCCCTCCCCCCTCATCCTTACTGCCGGCAAAGCTCCCAGTCGACTTCAGCCCTCCTCTAATCGCAATGGTTGTCGTCATCGCTACGGCCTTTCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCACGTCATCCCTCCAATCCTCCTCCTCATCCGCCGCCACCGCCGCCGCTGGCGGCGGTGGCGGCGGAGACGACGGCGCGCCCGATCTTACCTCCCGTCCTCCTCCGGCGGCGACTTGGATTCGCTCCCTTACGATTCGCCTTTCTTCGAGCATACGGATGGCTTCCACGTGTTCTCCCCGTACGGCCTCGACGAATCCATCATCAAGACGATTCCACTCTCCGTCTATACTGCCAAGAGTCGCCGTGACAGCCGTGACCGTGAGTGCGCCGTATGTCTTCTGGAGTTTGAAGACGACGATTACGTCCGAACGCTTCCGATTTGTTCTCACGCATTTCACGTTGATTGTATAGACGTATGGCTTAGATCACACGCGAACTGTCCTCTATGTCGCGCGGTGGTTTTCAGGCCAGAATCTCCGTTCACGCCGGTTATGGCAGCTAGAATCCGGCCAAGCCTCGACGATACGATCTTACAGAGCATCGTACTAGAGCCGCTAGCGGAAGGTCCTATTCCTAATCGAGATTCTTATAACGCAACAGAATCGGAAATCACGCCCTACGTTGATGAACCAAGGAACAGTAATTCGTTAGAGGATCAAATGAACGGGCGAGATTTCTTACTGAAGCGATCGTATTCATTCGGATTCGAACGAAGCTTGGCGTCAGAGAGAATGATTCTGGAACCGGCAACCGCATCGCCATGGAGGTACCGCCGTGGAAGCTTCTGGAGCAAACGGCCATCACCGTTCGGATCTCTACCGAAGGCGAGAGTGTTCTCATTCCGATACTACAGAGGAATGAAATCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCATCGAGACGAAGCAAGTCGATGACAAGTCCAATGTTTCTCCGATCGTCGGTAACCAGCGGAGGAGCAGCTACGTTCTCATCGAGCCGATTGAGATGCGGAGATCCCGAGGCATTACTATCACCGGAGAGATTCAACCGAAGATGA 1242 54.99 MSTAPSPSPSPSPSPSTSSSSSSAAAVNFPPPSSLLPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHVIPPILLLIRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEHTDGFHVFSPYGLDESIIKTIPLSVYTAKSRRDSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILQSIVLEPLAEGPIPNRDSYNATESEITPYVDEPRNSNSLEDQMNGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTSGGAATFSSSRLRCGDPEALLSPERFNRR 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4188349 4189590 + CmaCh20G008760.1 Cma20g00876 316690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00876 413 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 384 IPR044675 -
Cma20g00876 413 Pfam Ring finger domain 158 201 IPR001841 -
Cma20g00876 413 MobiDBLite consensus disorder prediction 1 25 - -
Cma20g00876 413 CDD RING-H2_PA-TM-RING 158 201 - -
Cma20g00876 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 205 IPR013083 -
Cma20g00876 413 MobiDBLite consensus disorder prediction 244 265 - -
Cma20g00876 413 SMART ring_2 159 200 IPR001841 -
Cma20g00876 413 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Cma20g00876 413 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 384 - -
Cma20g00876 413 MobiDBLite consensus disorder prediction 245 265 - -
Cma20g00876 413 SUPERFAMILY RING/U-box 150 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00876 Cma-Chr20:4188349 Cma19g00231 Cma-Chr19:1586009 4.96E-24 dispersed
Cma20g00876 Cma-Chr20:4188349 Cma02g01617 Cma-Chr2:9189010 6.38E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00876 - K19041 csv:101206300 658.677