Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00878 ATGGTGAAACCGAGCTACTTGAAAATGGTGACGGATTCTGACGCTGCGGATCTGATCTCCAATGATCTTCGGGAGCTTGGTAACGCTGCTAAAAAGCTTGCTACACATGCTGTTCAGCTTGGTGCTTCGGGTTTTCCTGCTGCTTTCCTCCAATGGCTTGCTTCCTTTGCTGCTATCTATTTGTTGATTTTGGATCGAACGAACTGGAAGACGAATATCCTTACCTCGTTGTTGATTCCGTACATTTTCTTCAGTCTTTCTGGAGTTATTTTCTTTTTTCTCAGGGGAGAGTTTGGAAAATGGGTCGCCGCCATTGCTGTTGTGCTCCGTCTCTTCTTCCCACGACGATTCCCAGATTGGCTTGAATTGCCTGGGGCTTTAATACTTCTGATTGTGGTGGCTCCGGGGTTGTTTGCGAGCACGATGAGGAACGACGCCATTGGAGAAGCAATCTGCCTGATCATATCATGCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGATTCAGAAACTCCTTCACCAAAGCCAATGGCATCTCAAACACCATTGGTATCATCCTTCTCTTTGTTTTCCCTGTCTGGGCACTGCAATTGAGTGTGATTGTATCATTGTAG 618 46.44 MVKPSYLKMVTDSDAADLISNDLRELGNAAKKLATHAVQLGASGFPAAFLQWLASFAAIYLLILDRTNWKTNILTSLLIPYIFFSLSGVIFFFLRGEFGKWVAAIAVVLRLFFPRRFPDWLELPGALILLIVVAPGLFASTMRNDAIGEAICLIISCYLLQEHIRASGGFRNSFTKANGISNTIGIILLFVFPVWALQLSVIVSL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4202286 4204015 - CmaCh20G008780.1 Cma20g00878 316692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00878 205 Pfam Cold acclimation protein WCOR413 9 189 IPR008892 GO:0016021
Cma20g00878 205 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 1 201 IPR008892 GO:0016021
Cma20g00878 205 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 1 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00878 - - - csv:101203533 364.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00426 Cma20g00878 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00738 Cma-Chr7:3259923 Cma20g00878 Cma-Chr20:4202286 4.55E-88 dispersed
Cma18g00453 Cma-Chr18:2507598 Cma20g00878 Cma-Chr20:4202286 5.89E-14 dispersed
Cma20g00878 Cma-Chr20:4202286 Cma02g00426 Cma-Chr2:2153987 8.04E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g533 . Blo15g00717 Bda06g01022 Bda08g00910 Bpe07g00407 . . Bma12g00487 . . Cma02g00426 Cma20g00878 Car02g00283 Car20g00757 . . . . . . . . . . . . . . . . . . . Cone3ag1128 Cone10ag1137 Lsi10g00330 . Chy11g00418 . . . . . . . . . Sed01g0322 Cmo02g00427 Cmo20g00885 . . . . . Cpe05g01235 Bhi10g02059 Tan05g1361 Cmetu11g1465 . Hepe08g1047 . . Cla09g01737 Cam09g1831 Cec09g1891 Cco09g1984 . . Cre01g0679 . Csa02g01218 . Cme11g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001642 8 2 3 5 3 2 3 2 2 1 1 1 3 2 2 3 1 2 3 2 2 2 2 2 1 2 2 2 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00878 Cma_Chr20 FPKM 70.514587 77.383682 78.097656 81.619209 21.479969 17.280264 22.345985 33.363995 36.055664 36.834164