Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00879 ATGGTTCGGATTCTGAAAAAGTTTTTCCAGGAGAAGCCTGCTTCTCCTGTTAACGATGAAGATTTCTCTGCTGAATGTTCTTTTGCCGTCGAATATACTGGTCCTGGAATCAATTACGAAATTCCCCGTGCAGTTCCTATCAATGTCGATGATATTCCAACTGCTTCTCTTGTTGTTTCATCGTCTCAGTTCGGCGATGATTTATCATCGCTGCCTGTGATACAACCTATCTTCAAGAAACTGAAAAGGGGCTCAAATTCCATCCCTAATTCTGTTTGTCTTGGTGCCAATAAGGAGGATAATGGGAAAGATGAATGTAATATCAATTCATGTGATGGAATTGGAAGTTCTGGTGAACTAGAGAATTTCTATGAGCAAAGGGGAAGATTAGAATCATTGGAAATTAAGAGTGAAGAGGATTTTCAAGGTTACACAAACTCGAGCGATTCGGAATCGGAAGAATCCGGTCGGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGAGGGAGAGGAAGAAGATGATGAAGAAACTCAGCCACGGCATGGCAGAAGGCCTTCATCTGTTACCTTTCTTGATACTCATTCAAGTCAATTTGAGGATGAGAGTATCCAAGAGATGCCTAGAGCTGAAAGGAAGGGGAAGAAAGGGTCGTGCTATTACTGCCTCAAAGGGAACCGTTTCACTGAAAAGGAAGTATGTTTAGTTTGTGGAGCCAAATATTGTTTTGAGTGTGTAATAAGAGCAATGGGATCAATGCCAGAAGGAAGGAAGTGTATCAGTTGTATTGGGTTCAGGATTGATGAATCAAGAAGAGAGAACCTTGGTAAAGTATCTAAAGTGCTCAAGAGGTTGCTTACTGACTCGGAAGTTAAGCGCACGATGTTGCGTGAGAAGGGGTGTGAAGTTAATCAGCTCCCAGCAAGACTTGTTTACGTCAATGGCGTCCGTTTAAGTCACCAAGAGCTGCTTATGTTGCAAAGTTGTCGAAAGCCACCGAAGAATCTAAAACCAGGACGGTATTGGTATGACAAAGTATCAGGCTTCTGGGGAAAGGAAGGACGTGGACCAAGTCAGATAGTTAGCTTCCAGCTCGAAGTCGGAGGTGGGATGAAGAGGGATGTTAGCAATGGCGATACAAACGTGTGCATCAATAATCGAGAGATCACTAAACAAGAGCTCCGGATACTGAAGATGGCTGGAGTACCTTGTGAAGGAAGGCCTTCTTTTTGGGTTAGTGCTGATGGATCATATCGAGAAGAGGGAATGAACAATCAGGGGAAAATATGGGACAAGACTAGAACGAAGCTTGCGTGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGCACCTTCTGGAGAGGAAATAGTGGACAAAGCTAGTTATGTTTGTCCCGAGCTGAAACCGATTCATAAACTTCTACTTGTTGGCCACAAAAATTCTGGCACGAGTACCATATTCAAGCAGGCCAAACTAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCGTAGTATAAAGTTCCTGATTCAAAGGAAGTTGTATTGGTATCTTAGCATACTATTGGAAGGACGGGAACGTTTTGAAGAAGAGATTTTGATGGACGAGAAAAATAAGAAACCCGTGAACGATCCGTCCACCTCGTCAGCATCAGGGAATGAAGATCCGTTGGAGCGTAAGACCACCTATTCCCTTGGCCTTAAACTGAAAGGATTTGCAGATTGGCTTCTTCAAGTCGTGGCGTCGGGTAACTTCGAAATCATATTCCCGGCTGCTACCCGTGTGTATACCCAATTAGTGGAAGAGTTATTGAAGGATGAAGCCTTTCAAGCCACATACAGTAGAAGACACGAACTAGAAATGCTCCCAAGCGTTGCTACGTATTTCCTTGATCAAGCTGTTGACATTTCAAGTACAGAGTATGACCCTTCTCACAAGGACATCTTGTATGCCGAGGGGATCTCCTCATGTAACAGCCTCATTAACATGGAGTTCTCATTCCCAGAGTCACGACAAGACTCCTATCTCGATCCTCCTTACGAGCACGATTCGTCGTTAAGGTACCAGCTGATTCGAGTTCATCATAGTACCCTGGGAGGGAACTGCAAATGGTTGGAGATGTTTGAAGACATGAACATAATCTTATTTTGCGTTGCTTTGACCGATTACGATGAATTCGACGAAGACGATAACGGAGTTCTAGCAAACCGGATGATGGTAAGCAAGCAACTCTTCGAAAGCATCGTGACGCATCGAGCCTCGAGAGGGAAGAACTTCCTTCTCATACTCAACAAGTTTGATCTCTTTGAAGAAAAGATCATTCAAGTTCCTCTTGACCAATGCGCGTGGTTCCATGACTTCAATTCGATGATGGCTACAAATTCGGGTGGAGGAAGTAGCAGCGACACGAACCCGGCATTTGCTCAACGAGCGTTTCAGTACATAGCAGTGAAATTCAAGAGATTGTTCAGTTCTTTGACAGACAAAAAGTTGTTTGTTTCACAGACTACAGGGATGAAGGCTGAAAATGTGAATGCAGCTCTTAGATTTGCAAGGGAGATAATCAAATGGCAAGTAGACAAGCCTAACCTCAGCGTTACTGAAATTTCAAATGCCAGCGTTGATGCAAGCAGCAGCTTCACATAG 2646 43.58 MVRILKKFFQEKPASPVNDEDFSAECSFAVEYTGPGINYEIPRAVPINVDDIPTASLVVSSSQFGDDLSSLPVIQPIFKKLKRGSNSIPNSVCLGANKEDNGKDECNINSCDGIGSSGELENFYEQRGRLESLEIKSEEDFQGYTNSSDSESEESGRSSSSGIFAVREGEEEDDEETQPRHGRRPSSVTFLDTHSSQFEDESIQEMPRAERKGKKGSCYYCLKGNRFTEKEVCLVCGAKYCFECVIRAMGSMPEGRKCISCIGFRIDESRRENLGKVSKVLKRLLTDSEVKRTMLREKGCEVNQLPARLVYVNGVRLSHQELLMLQSCRKPPKNLKPGRYWYDKVSGFWGKEGRGPSQIVSFQLEVGGGMKRDVSNGDTNVCINNREITKQELRILKMAGVPCEGRPSFWVSADGSYREEGMNNQGKIWDKTRTKLACALFSLPIPSNSAPSGEEIVDKASYVCPELKPIHKLLLVGHKNSGTSTIFKQAKLIYKVPFSDDERRSIKFLIQRKLYWYLSILLEGRERFEEEILMDEKNKKPVNDPSTSSASGNEDPLERKTTYSLGLKLKGFADWLLQVVASGNFEIIFPAATRVYTQLVEELLKDEAFQATYSRRHELEMLPSVATYFLDQAVDISSTEYDPSHKDILYAEGISSCNSLINMEFSFPESRQDSYLDPPYEHDSSLRYQLIRVHHSTLGGNCKWLEMFEDMNIILFCVALTDYDEFDEDDNGVLANRMMVSKQLFESIVTHRASRGKNFLLILNKFDLFEEKIIQVPLDQCAWFHDFNSMMATNSGGGSSSDTNPAFAQRAFQYIAVKFKRLFSSLTDKKLFVSQTTGMKAENVNAALRFAREIIKWQVDKPNLSVTEISNASVDASSSFT 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4206037 4210522 + CmaCh20G008790.1 Cma20g00879 316693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00879 881 Pfam G-protein alpha subunit 470 855 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 ProSiteProfiles G-alpha domain profile. 469 870 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 SMART galpha_1 451 869 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 MobiDBLite consensus disorder prediction 139 162 - -
Cma20g00879 881 SUPERFAMILY Transducin (alpha subunit), insertion domain 498 651 IPR011025 GO:0007165
Cma20g00879 881 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 878 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 878 - -
Cma20g00879 881 MobiDBLite consensus disorder prediction 543 558 - -
Cma20g00879 881 MobiDBLite consensus disorder prediction 135 208 - -
Cma20g00879 881 PRINTS Alpha G protein (transducin) signature 472 487 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 PRINTS Alpha G protein (transducin) signature 711 739 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 PRINTS Alpha G protein (transducin) signature 759 768 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma20g00879 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 857 IPR027417 -
Cma20g00879 881 Gene3D - 499 652 IPR011025 GO:0007165
Cma20g00879 881 MobiDBLite consensus disorder prediction 538 558 - -
Cma20g00879 881 Gene3D - 661 862 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00879 - - - csv:101202880 1377.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00427 Cma20g00879 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00733 Cma-Chr1:3851351 Cma20g00879 Cma-Chr20:4206037 1.08E-06 dispersed
Cma03g01011 Cma-Chr3:7065219 Cma20g00879 Cma-Chr20:4206037 5.00E-07 dispersed
Cma07g00733 Cma-Chr7:3239396 Cma20g00879 Cma-Chr20:4206037 3.68E-07 dispersed
Cma16g01196 Cma-Chr16:9109705 Cma20g00879 Cma-Chr20:4206037 0 dispersed
Cma20g00879 Cma-Chr20:4206037 Cma01g01699 Cma-Chr1:11561030 3.25E-28 dispersed
Cma02g00427 Cma-Chr2:2160407 Cma20g00879 Cma-Chr20:4206037 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00879 Cma_Chr20 FPKM 1.918956 1.556847 3.419762 2.717163 6.157833 7.373358 6.01791 14.49231 13.791553 14.07346