Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00883 ATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTGGGTTTAAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTATTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAATCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCATTCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCCACACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACTTGATTCTAGCGATCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACAGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGAGTTTCAGGATTCATCAAACTTCAGACACCGGACGGGAGACAGTGGCCTGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATTCTACCGGCACTATGAATCCTCCTCCGCTGCGAAGTGTTACCCAGATTAAGCTGATCAGAAACTAA 1107 42.01 MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSIQSMNSGSLRNKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGGKKRKLDSSDHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNSTGTMNPPPLRSVTQIKLIRN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4245137 4247288 - CmaCh20G008830.1 Cma20g00883 316697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00883 368 MobiDBLite consensus disorder prediction 179 199 - -
Cma20g00883 368 SUPERFAMILY DNA-binding pseudobarrel domain 237 337 IPR015300 -
Cma20g00883 368 Gene3D - 1 71 IPR015300 -
Cma20g00883 368 Pfam B3 DNA binding domain 8 67 IPR003340 GO:0003677
Cma20g00883 368 Pfam B3 DNA binding domain 245 335 IPR003340 GO:0003677
Cma20g00883 368 Gene3D - 219 339 IPR015300 -
Cma20g00883 368 ProSiteProfiles B3 DNA-binding domain profile. 1 70 IPR003340 GO:0003677
Cma20g00883 368 SMART B3_2 2 70 IPR003340 GO:0003677
Cma20g00883 368 SMART B3_2 242 337 IPR003340 GO:0003677
Cma20g00883 368 PANTHER B3 DOMAIN-CONTAINING 4 124 - -
Cma20g00883 368 PANTHER B3 DOMAIN-CONTAINING 186 348 - -
Cma20g00883 368 ProSiteProfiles B3 DNA-binding domain profile. 242 337 IPR003340 GO:0003677
Cma20g00883 368 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 4 124 - -
Cma20g00883 368 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 186 348 - -
Cma20g00883 368 CDD B3_DNA 5 68 IPR003340 GO:0003677
Cma20g00883 368 SUPERFAMILY DNA-binding pseudobarrel domain 5 70 IPR015300 -
Cma20g00883 368 CDD B3_DNA 240 335 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00430 Cma20g00883 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00429 Cma-Chr2:2171108 Cma20g00883 Cma-Chr20:4245137 1.51E-54 dispersed
Cma02g00430 Cma-Chr2:2178446 Cma20g00883 Cma-Chr20:4245137 0 dispersed
Cma02g00567 Cma-Chr2:3230487 Cma20g00883 Cma-Chr20:4245137 1.33E-37 dispersed
Cma05g00211 Cma-Chr5:895677 Cma20g00883 Cma-Chr20:4245137 2.25E-12 dispersed
Cma12g00508 Cma-Chr12:2623724 Cma20g00883 Cma-Chr20:4245137 8.46E-28 dispersed
Cma20g00883 Cma-Chr20:4245137 Cma20g01138 Cma-Chr20:9000435 8.20E-11 dispersed
Cma20g00882 Cma-Chr20:4240969 Cma20g00883 Cma-Chr20:4245137 1.28E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37041 PF02362 B3 4.90E-18 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00883 - - csv:101213446 697.967