Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00892 ATGGCCCAGCCGTCCAATGGAGCTGATCTCAATCCCCAGGCCCCCCACCCCCACCAACAATGGTTTCAACAACAACAACAGTATCAACAGCAATGGATGGCGATGCAGTACCCCGCAGCCGCCATGGCCATGATGCATCAACAACAGATGATGATGTACCCTCCTCAGCATTACATGACGTATTCTCACCTTCCTTATCAACAGCAGCCGCCGCCGTTGCAGCAGCAGCAGCAACAGCAAGCTCAGTCGCAGCGACCTCGCAGACAGGGGTCCACGGACGAGGTTAAGACGCTTTGGATTGGTGATCTTCAGCCTTGGATGGACGAGACCTATCTCCACAATTGTTTCGCTCACATCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAGGTATTGCAGAATTATAATGGAGCTATAATGCCTAACACAGATCTGCCTTTTCGTCTCAATTGGGCAACCTTTAGTGGAAGTGATAGGCGACCGGACACTGGGTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAGGGAGCCAAGGTTGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGATTTGTCAGGTTTGGTGATGAAAGTGAAAGGACAAGGGCTGTCACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCATCACAAGCTTTGGTATTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGTGAATCGAACAACACGACTATATTTGTTGGTGGCCTTGATTCTGATGTTAGTGACGAAGATCTCAGGCAACCTTTCTCTAAATTTGGTGAGATTGTCTCTGTGAAAATCCCGATTGGAAAAGGATGTGGATTTGTGCAATTTGCCAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGTACAGTTATCGGCAAGCAAACTGTTCGTCTTTCTTGGGGTCGCAGTACAGGGAACAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGAGGGCAAGGCTATGGTGGCTATGGTGGTTACTACTCTATACCACAGCATCAGGACGCAAACATGCATGCCGCAGCTGCCGCAGTCAATGGGACATCTTGA 1296 46.53 MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSIPQHQDANMHAAAAAVNGTS 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4287687 4295172 - CmaCh20G008920.1 Cma20g00892 316706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00892 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Cma20g00892 431 MobiDBLite consensus disorder prediction 64 95 - -
Cma20g00892 431 SUPERFAMILY RNA-binding domain, RBD 173 282 IPR035979 GO:0003676
Cma20g00892 431 MobiDBLite consensus disorder prediction 64 88 - -
Cma20g00892 431 CDD RRM3_NGR1_NAM8_like 306 377 - -
Cma20g00892 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Cma20g00892 431 CDD RRM2_SECp43_like 188 267 - -
Cma20g00892 431 CDD RRM1_SECp43_like 97 177 - -
Cma20g00892 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 379 IPR000504 GO:0003723
Cma20g00892 431 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 426 - -
Cma20g00892 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Cma20g00892 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 372 IPR000504 GO:0003723
Cma20g00892 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 261 IPR000504 GO:0003723
Cma20g00892 431 Gene3D - 180 282 IPR012677 -
Cma20g00892 431 Gene3D - 56 179 IPR012677 -
Cma20g00892 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 426 - -
Cma20g00892 431 MobiDBLite consensus disorder prediction 1 22 - -
Cma20g00892 431 SMART rrm1_1 190 264 IPR000504 GO:0003723
Cma20g00892 431 SMART rrm1_1 308 375 IPR000504 GO:0003723
Cma20g00892 431 SMART rrm1_1 97 170 IPR000504 GO:0003723
Cma20g00892 431 SUPERFAMILY RNA-binding domain, RBD 59 179 IPR035979 GO:0003676
Cma20g00892 431 SUPERFAMILY RNA-binding domain, RBD 299 409 IPR035979 GO:0003676
Cma20g00892 431 Gene3D - 290 414 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00892 - - - csv:101215609 652.899
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00443 Cma20g00892 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01860 Cma-Chr1:12230755 Cma20g00892 Cma-Chr20:4287687 9.00E-148 dispersed
Cma09g00213 Cma-Chr9:904988 Cma20g00892 Cma-Chr20:4287687 7.28E-154 dispersed
Cma18g00250 Cma-Chr18:1323731 Cma20g00892 Cma-Chr20:4287687 4.74E-117 dispersed
Cma12g00518 Cma-Chr12:2676295 Cma20g00892 Cma-Chr20:4287687 2.62E-150 wgd
Cma02g00443 Cma-Chr2:2254923 Cma20g00892 Cma-Chr20:4287687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00892 Cma_Chr20 FPKM 189.139099 195.95636 151.30217 148.854996 75.645966 80.648376 73.783417 210.792084 209.423508 200.303299