Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00894 ATGGATTCCACCGAAATTGCCCACAACTTTTCCCCTTTGTTTATCGTTTACAAAGACGGTACCGTCCACAGGTTCCTCGGCAACGATGTAATACCTCCTTCTCCGGATCCCCTTACCGGCGTCGATTCCAAAGACGTCGTCATCTCCCCGGAAACCGCTGTCTCTGTTCGGATTTACAGGCCCAAACCCGCCACCGCCACCGCACAACCCCAGAAGCTTCCTGTTCTCGTTTACGTCCACGGCGGTGGCTTCTGCATCGAATCGGCATTCTCCCCTTTCTACGACCGCCACGTCAAGTCCTTATCTGCTGAAGCCAACGTTGTCGCCGTCTCTGTTGACTACCGCCTTGCTCCGGAGCACCCTCTTCCGATTGCTTATGAAGATTCATGGGCCGCTCTGAAATGGGTCGCTGCCCATTCCGATGGAAACGGGCCGGAGGAGTGGCTGAATGGAATCGTGGATTTGGATCGGGTTTATTTTGCTGGAGATAGCGCTGGAGCTAACATTGTTCATCACTTGGCGGTTCGGGTCGGGTCGGAGGGGATTCCCGGGTTGAATCTGAAGGGATTGATTTTGGTTCATCCTTATTTCTGGGGAGGTAAATTGGTCGGAGATGAAGAGAAGCTGAGACCGGAGGAAAGACACTTTATGGAGAAATTGTGGTATGTGACTTGCCCTACAATTAGCGGGTTAGATGACTCGATTGTGAACCCGGAATATGACCCGAAATTGGGACAGCTGGCGGCGGAGAGAGTGGTGGTTTATGTGGCGGAGAAGGATGCTCTGAAGAACAGAGGATGGTTTTACAGTGAGTGTTTGAAGAAATCGGGATGGGGTGGCACCGTCGAGGTCGTGGAGACAAAAGGCGAAGGCCACGTGTTCCATTTGTTCAACCCAACGACCGACGTGGCGGTGGATTTCGTCAGAAAGCTTGCTGCCTTCATCAATGGCAATGGCGGCCGCCATGATTGA 972 52.88 MDSTEIAHNFSPLFIVYKDGTVHRFLGNDVIPPSPDPLTGVDSKDVVISPETAVSVRIYRPKPATATAQPQKLPVLVYVHGGGFCIESAFSPFYDRHVKSLSAEANVVAVSVDYRLAPEHPLPIAYEDSWAALKWVAAHSDGNGPEEWLNGIVDLDRVYFAGDSAGANIVHHLAVRVGSEGIPGLNLKGLILVHPYFWGGKLVGDEEKLRPEERHFMEKLWYVTCPTISGLDDSIVNPEYDPKLGQLAAERVVVYVAEKDALKNRGWFYSECLKKSGWGGTVEVVETKGEGHVFHLFNPTTDVAVDFVRKLAAFINGNGGRHD 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4303143 4304114 + CmaCh20G008940.1 Cma20g00894 316708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00894 323 PANTHER ARYLACETAMIDE DEACETYLASE 3 316 - -
Cma20g00894 323 Pfam alpha/beta hydrolase fold 76 295 IPR013094 GO:0016787
Cma20g00894 323 PANTHER CARBOXYLESTERASE 2-RELATED 3 316 - -
Cma20g00894 323 SUPERFAMILY alpha/beta-Hydrolases 6 317 IPR029058 -
Cma20g00894 323 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 158 170 IPR033140 -
Cma20g00894 323 Gene3D alpha/beta hydrolase 9 319 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00894 - - - cmax:111484271 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01853 Cma-Chr1:12214600 Cma20g00894 Cma-Chr20:4303143 1.69E-96 dispersed
Cma02g00444 Cma-Chr2:2273180 Cma20g00894 Cma-Chr20:4303143 9.40E-93 dispersed
Cma02g00445 Cma-Chr2:2275085 Cma20g00894 Cma-Chr20:4303143 1.35E-150 dispersed
Cma05g00200 Cma-Chr5:849515 Cma20g00894 Cma-Chr20:4303143 2.14E-95 dispersed
Cma09g00463 Cma-Chr9:2036700 Cma20g00894 Cma-Chr20:4303143 5.42E-57 dispersed
Cma20g00894 Cma-Chr20:4303143 Cma02g01197 Cma-Chr2:7076611 7.60E-46 dispersed
Cma20g00894 Cma-Chr20:4303143 Cma20g00896 Cma-Chr20:4314016 7.43E-57 proximal
Cma20g00893 Cma-Chr20:4298988 Cma20g00894 Cma-Chr20:4303143 1.68E-88 tandem
Cma20g00894 Cma-Chr20:4303143 Cma20g00895 Cma-Chr20:4313622 2.80E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g441 Blo02g00823 . . . . . . . . . . Cma20g00894 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00298 . . . . . . . . . . . Sed01g0344 . . . . . . . . Bhi10g02088 Tan05g1409 Cmetu11g1661 . Hepe08g1072 . . Cla09g01701 Cam09g1797 Cec09g1860 Cco09g1950 . . Cre01g0710 . Csa02g01191 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00894 Cma_Chr20 FPKM 0.962963 0.759406 5.063613 7.141651 5.16373 5.48772 5.846624 52.009975 53.840927 54.85931