Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00896 ATGGGGGGAGCGGGGCCGGATGAGTGGCTGAATGAAATTGCGGATTTGAACCGGGTTTATTTGGGTGGAGATAGCGCCGGAGGAAACATTGCACATAGGATGGCGCTGCGGGTGGCGACGGAGGGGCTGGCCGGAGTGAAGATCAAGGGATTGCAGTTGATTCACCCGCATTTTTTTGGGGGAAAAATTGATCGGAGAAGAAAAGGAGTGGGATCCAAAGGATATATTTGTGGTGAAGAATCTGTGGATATTAAGGAGCTGGATCACCCGATTGTGAACCCGGAATACGACCCGGATTTGGGGTGGCTTCCGGCGGAGAAAGTGGCGGTTTATGTGGCGGAGAAGGACAATCTAAAGGAGAGGGGACTACAGTACGCGGAATGTCTGAGAAATTCAGGTTGGGACGGGGTCGTTGAGGTGGTCGAAACCGACGATGAAGGCCATGTCTTCCATTTGTTCAATCCGACCAGCGACTCAGCG 480 52.92 MGGAGPDEWLNEIADLNRVYLGGDSAGGNIAHRMALRVATEGLAGVKIKGLQLIHPHFFGGKIDRRRKGVGSKGYICGEESVDIKELDHPIVNPEYDPDLGWLPAEKVAVYVAEKDNLKERGLQYAECLRNSGWDGVVEVVETDDEGHVFHLFNPTSDSA 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4314016 4314527 + CmaCh20G008960.1 Cma20g00896 316710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00896 160 PANTHER ARYLACETAMIDE DEACETYLASE 5 160 - -
Cma20g00896 160 PANTHER CARBOXYLESTERASE 13-RELATED 5 160 - -
Cma20g00896 160 Gene3D alpha/beta hydrolase 8 160 IPR029058 -
Cma20g00896 160 Pfam alpha/beta hydrolase fold 9 151 IPR013094 GO:0016787
Cma20g00896 160 SUPERFAMILY alpha/beta-Hydrolases 9 156 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00896 - - - csv:101208483 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00896 Cma-Chr20:4314016 Cma01g01853 Cma-Chr1:12214600 6.45E-33 dispersed
Cma20g00894 Cma-Chr20:4303143 Cma20g00896 Cma-Chr20:4314016 7.43E-57 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g438 . . . . . . . Bma12g00465 . . . Cma20g00896 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00291 . Chy11g00446 . . . . . . . . . . . Cmo20g00903 . . . . . . Bhi10g02091 Tan05g1416 Cmetu11g2337 . Hepe08g1077 . . . . . . . . . . . . Cme11g00528
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00896 Cma_Chr20 FPKM 2.964583 0.0 0.0 0.0 3.569779 1.044121 0.0 1.928783 0.0 1.170768