Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00927 ATGGAGACGTGGTTCATCATCATCATTTCGCTCTGTTTCTGTTCCCTTCTGAACTCCATTTTTTCACACTGCCGAAGCTCCATCAACCTCCCACCAGGCCCTCCTTCCATCCCCATCTTCACTAATCTCCAATGGCTCCGCAGATCCCCTCTTCAAATCGAGTCTCTTCTCCGCACCTCCGTCGCCAAATACGGCCCCATCATCACCCTCCCCATTGGCACTCGCCCCACCGTCTTCATCGCCGACCGCTCCATCGCCCACAACGCCCTTGTCCTAAACGGTGCTCTTTTCGCCGACCGTCCAACTGCACTTCCCATCAGCAAGATCGCCTCCAGTAACCAGCATAATATCAACACCGCCTCTTATGGCCCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGGGTCAAGTCCTACGCCCGTGCTCGCAGGTGGGTTTTGGATATTCTTATTGATCGGTTCCTCTCTCACTCTCAATTGGGAGAACCCATTTTCGTTGTGGATCATTTTCAGTACGCTATGTTTTGTTTGTTGGTGTTGATGTGCTTTGGAGACAAGCTTGAGGAATCCCAGATCAAGGAAATTGAGAACGTGCAGCGTGCGATGCTGGTAAACCTTGGGCGTTTCAACGCTCTCAATTTCTGGCCCAAATTGACCAAGATTTTCCTCCAAAAGCGCTGGGAGACGTTTCATGAACTCAAGAGGAAGCGAGATGAAGTCACCATCCCTTTAATCGAAGCAAGAAGAAAGGCCATCCAAAACAGAGAAAACAGAGCAAACAGAGCAAACAGAGCCGAAGCTGAAGAAGAAAAAGAAGAATTCGTGGTGTCATATGTGGATACCCTTCTCGATTTGGAGCACCCAGACGAGAAGAGAAAGCTTACAGATGAAGAAATGGCCACTCTAGCCTCTGAATTCCTCAACGCCGGCACCGACACCACGTCGACGGCCCTGCAATGGATAATGGCGAATTTGGTGAAATACCCAGAAATCCAACACAAGCTTTTTGCAGACATGAAAGGAGTAATGGGAGATGGAACAGGGGAGGAGGTGAAGGAAGAGGATTTGGGGAAGCTTCCATATCTGAGAGCTGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCGTGTTACCACACGCAGTGAAAGAAGACACGGTGTTGGAGAATTACGTGATACCAAAGAACGGAACTGTAAATTTCATGGTGGCGGAGATGGGTTGGGATCCGGAAGTGTGGGAAGAGCCGATGGCGTTCAAGCCGGAGAGGTTCATGAAGGGCGGGGAAGAAGAAGAAGTGGCGGGGTTTGATATAACAGGGAGCAAGGAGATAAAGATGATGCCGTTCGGCGCAGGGAGGAGGATGTGCCCAGGATTCGGTCTGGCAATTCTCCATTTGGAGTATTTCATAGCCAATCTGGTTTGGAGGTTTGAATGGAAGGCGGTGGAGGGTGACGGCGTCGATCTGTCGGAGAAGGTGGAGTTCACGGTGGTGATGGAGAAGCCTCTGAAAGCCAACATAATCCCCAGGTCTTAA 1563 50.61 METWFIIIISLCFCSLLNSIFSHCRSSINLPPGPPSIPIFTNLQWLRRSPLQIESLLRTSVAKYGPIITLPIGTRPTVFIADRSIAHNALVLNGALFADRPTALPISKIASSNQHNINTASYGPLWRLLRRNLTSQILHPSRVKSYARARRWVLDILIDRFLSHSQLGEPIFVVDHFQYAMFCLLVLMCFGDKLEESQIKEIENVQRAMLVNLGRFNALNFWPKLTKIFLQKRWETFHELKRKRDEVTIPLIEARRKAIQNRENRANRANRAEAEEEKEEFVVSYVDTLLDLEHPDEKRKLTDEEMATLASEFLNAGTDTTSTALQWIMANLVKYPEIQHKLFADMKGVMGDGTGEEVKEEDLGKLPYLRAVVLEGLRRHPPGHFVLPHAVKEDTVLENYVIPKNGTVNFMVAEMGWDPEVWEEPMAFKPERFMKGGEEEEVAGFDITGSKEIKMMPFGAGRRMCPGFGLAILHLEYFIANLVWRFEWKAVEGDGVDLSEKVEFTVVMEKPLKANIIPRS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4543054 4544616 + CmaCh20G009270.1 Cma20g00927 316741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00927 520 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 SUPERFAMILY Cytochrome P450 31 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 517 - -
Cma20g00927 520 PANTHER CYTOCHROME P450 4 517 - -
Cma20g00927 520 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 Coils Coil 255 279 - -
Cma20g00927 520 Pfam Cytochrome P450 31 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00927 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Cma20g00927 520 Gene3D Cytochrome P450 24 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01419 Cma-Chr4:7255537 Cma20g00927 Cma-Chr20:4543054 3.28E-117 dispersed
Cma15g01047 Cma-Chr15:6566485 Cma20g00927 Cma-Chr20:4543054 0 dispersed
Cma20g00927 Cma-Chr20:4543054 Cma20g00929 Cma-Chr20:4568111 0 dispersed
Cma20g00927 Cma-Chr20:4543054 Cma20g00928 Cma-Chr20:4560155 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00927 K24184 - csv:101204559 847.04