Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00928 ATGGCGATGTGGTTCATCATCCTCATCTCCCTCTGCATCTGCTATGTTCTAAGCTCCATTTTTAGCCATTTCCAGAGCTCCACCAAGCTTCCACCAGGCCCTCCTTCAATCCCCATCATCTCCACTTTCCTATGGCTCCACACATCGCCTCTCCAAATGGAATCTTACCTCCGCACCGCCGTCGCCAAATACGGCCCCATCGTCACCCTCCGTATCGGCTCTCGCATCTCCATCTTCATAGCCGACCGCACCATTGCTCACAACGCCCTCCTCCAACACGGCGCTCTCTTCGCCGACCGCCCTCCAGTTCCTCCTTTGGTCAAAATCCTCTCCAGCAACCAGCACAGCATCAACTCCGCCCCTTACGGCCCACTCTGGCGCCTCTTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGTGTCAGATCCTACGCTCCTGCTCGCAAATGGGTTTTGGATATTCTTCTTAAACGCCTTCTCCCTAACTCTGAATCGGTGAGTCCCGTCTGTGTTGTGGAGCATTTTCAGTATGCCATGTTCTGTTTGTTGGTGCTAATGTGCTTTGGGGATAAACTCGACGAACCCAAAATCAAAGAAGTCGAGAATGTGCAGCGTACGATGCTGCTAAATCTCAGGCGTTTTGGTCTCCTCAATTTATCGCCTAAATTGACAAAGATTTTCCTTCCAAAACGCTGGGAGGAGTTTCTCCAACTAAGAAGGAACCAAGAGCGAGTCATAATCCCTCTAATCGAAGCAAGAAGGAAGGCCAAGCAAAACAGAGGAAACAGAGGAAACAGAGAAGAAAACAGAGAAGGTAAAGAAGAAGAAGAAGAAGATGAAGATTTCGTGTTGTCGTATGTGGACACACTCCTCGAATTACACCTCCCCGAAGAGGGCAATAGAAAGGTAACAGACGGCGAAATGGTCGGTCTATGCTCGGAATTCCTCACCGGCGGCACGGATACCACCTCCACGACCATGCAGTGGATAATGGCGAATTTAGTGAAACACCCAGAAATCCAACACAAGCTCTTCGAAGAGATCCAAGGAGTAATGGGAAATGGAACAGAGGAGGAGGTGAAGGAAGAGGATTTGGGGAAGCTTCCATATCTGAAAGCTGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCTTTTCCTACAAGCACGAGGGGTGAAAGAGGATATAGAATTCTTAAACTACGTGATACCCAAGAACGCGTCTGTAAATTTCATGGCGGCGGAGATGGGTCGGGGTGCAGACGTATGGGAAGATCCGATGGTGTTTAAGCCGGAGAGGTTCATGGGAGGAGGAGCGGCGGGGTTTGATGTAACGGGGAGCAAAGAGATAAAGATGATGCCGTTCGGAGCAGGGAGGAGGATATGTCCAGGATATGGCTTGGGGATCCTTCATTTGGAGTATTTCTTAGCGAATTTGGTGTGGAAATTTGAATGGAAGGGTGTGGATGGGGACGATGTTGATCTGTCGGAGAAGGTAGAGTTCACCGTTGTGATGAAAAACCCTCTGAAAGCCAACATAAGTCCCAGGTTTTAA 1563 49.58 MAMWFIILISLCICYVLSSIFSHFQSSTKLPPGPPSIPIISTFLWLHTSPLQMESYLRTAVAKYGPIVTLRIGSRISIFIADRTIAHNALLQHGALFADRPPVPPLVKILSSNQHSINSAPYGPLWRLFRRNLTSQILHPSRVRSYAPARKWVLDILLKRLLPNSESVSPVCVVEHFQYAMFCLLVLMCFGDKLDEPKIKEVENVQRTMLLNLRRFGLLNLSPKLTKIFLPKRWEEFLQLRRNQERVIIPLIEARRKAKQNRGNRGNREENREGKEEEEEDEDFVLSYVDTLLELHLPEEGNRKVTDGEMVGLCSEFLTGGTDTTSTTMQWIMANLVKHPEIQHKLFEEIQGVMGNGTEEEVKEEDLGKLPYLKAVVLEGLRRHPPGLFLQARGVKEDIEFLNYVIPKNASVNFMAAEMGRGADVWEDPMVFKPERFMGGGAAGFDVTGSKEIKMMPFGAGRRICPGYGLGILHLEYFLANLVWKFEWKGVDGDDVDLSEKVEFTVVMKNPLKANISPRF 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4560155 4561717 + CmaCh20G009280.1 Cma20g00928 316742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00928 520 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 MobiDBLite consensus disorder prediction 259 281 - -
Cma20g00928 520 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 518 - -
Cma20g00928 520 PANTHER CYTOCHROME P450 4 518 - -
Cma20g00928 520 Pfam Cytochrome P450 31 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Cma20g00928 520 Gene3D Cytochrome P450 24 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00928 520 MobiDBLite consensus disorder prediction 259 273 - -
Cma20g00928 520 SUPERFAMILY Cytochrome P450 31 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00928 Cma-Chr20:4560155 Cma20g00932 Cma-Chr20:4582877 0 dispersed
Cma20g00927 Cma-Chr20:4543054 Cma20g00928 Cma-Chr20:4560155 0 tandem
Cma20g00928 Cma-Chr20:4560155 Cma20g00929 Cma-Chr20:4568111 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00928 K24184 - csv:105434706 805.823