Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00929 ATGGAGATTTGGTTCGTCGCCATCGTCTCCCTCTGCGTCTGCTCTCTTCTAACCTCCATTTTTACCCATTTCCAAAGCTCCACCAATCTCCCACCAGGCCCTCCTTCAATACCCATCATCACAACTTTCCTGTGGCTCCGCCAATCGCCTCTCCAAATTGAATCTCTCCTCCGCAGTTTCGCCGCCAAATATGGCCCCGTCGTCACCCTCCGCATCGGCAACCGCCCCACCATCTTTATCTCCGACCGCTCTATTGCTCATAAAGCCCTCCTCCAAAACGGTGCTCTCTTCGCCGACCGTCCACCGGCTCCACCCATGAGCAAGATCATCTCCAGCAACCAACACAACATCAGCTCCGCCTCTTACGGCCCACTCTGGCGCCTCCTACGTCGCAATCTCACTTTCCAAATCCTTCATCCTTCTCGGGTTAAGTCCTATAATCGAGCTCGCAAGTGGGTTTTGGATATTCTTCTTAATCGGCTTGTTTCTCATTCGAAATCTGAAACTCCCGTTACCGTCATCGATCATTTTCATTACGCTATGTTCTGTTTGTTGGTGTTGATGTGCTTTGGGGATAAGCTTGAGGAACCCCAGATTCATGAAATTGAAAACGTACACCGAGCTATGCTGTTGAGCTTTCGCCGTTTCAACGTCCTTAATTTCTGGCCGAAATTGACGAAGATTTTGCTCCGTAAGCGCTGGGAGGCGTTCTTCGAAATCAGAAGAAATCAGGAGAAAGTCATCATCCCTTTGATTGAAGCAAGAAGGAAGGCCAACCAAAACAGAGTAAACAGAGAAAGCAGAGCCGAAACTGAAGAAGATTTCGTGGTGTCATATGTGGACACACTCCTCGATTTGGAGCTTCCCGACGAGGACAATAGAAAGCTTACCGATGAGGAGATTGTGACCATATGCTCGGAATTCCTCAACGCCGGCACCGACACGACGTCCACGGCCTTGCAGTGGATAATGGCGAATTTAGTGAAATACCCAGAAATCCAACACAAGCTTTTTGCAGAGATGAAAGGAGTAATGGGGGATGGAACAGGGGAGGAGGTGAAGGAAGAGGATTTGGGGAAGCTTCCATATCTGAGAGCTGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCGTGTTACCACACGCAGTGAAAGAAGACACGGTGTTGGAGAATTACGTGATACCAAAGAACGGAACTGTAAATTTCATGGTGGCGGAGATGGGTTGGGATCCGGAAGTGTGGGAAGAGCCGATGGCGTTCAAGCCGGAGAGGTTCATGAAGGGCGGGGAAGAAGAAGAAGTGGCAGGGTTTGATATAACAGGGAGCAAGGAGATAAAGATGATGCCGTTCGGCGCAGGGAGGAGGATGTGCCCAGGATTCGGTCTGGCAATTCTTCATTTGGAGTATTTCATAGCCAATCTGGTTTGGAGGTTTGAATGGAAGGTGGTGGAGGGCGACGGCGTCGATCTGTCGGAGAAGGCGGAGTTCACGGTGGTGATGGATAAGCCTCTCAAAGCCAACATTCATCCCAGGTGA 1545 49.9 MEIWFVAIVSLCVCSLLTSIFTHFQSSTNLPPGPPSIPIITTFLWLRQSPLQIESLLRSFAAKYGPVVTLRIGNRPTIFISDRSIAHKALLQNGALFADRPPAPPMSKIISSNQHNISSASYGPLWRLLRRNLTFQILHPSRVKSYNRARKWVLDILLNRLVSHSKSETPVTVIDHFHYAMFCLLVLMCFGDKLEEPQIHEIENVHRAMLLSFRRFNVLNFWPKLTKILLRKRWEAFFEIRRNQEKVIIPLIEARRKANQNRVNRESRAETEEDFVVSYVDTLLDLELPDEDNRKLTDEEIVTICSEFLNAGTDTTSTALQWIMANLVKYPEIQHKLFAEMKGVMGDGTGEEVKEEDLGKLPYLRAVVLEGLRRHPPGHFVLPHAVKEDTVLENYVIPKNGTVNFMVAEMGWDPEVWEEPMAFKPERFMKGGEEEEVAGFDITGSKEIKMMPFGAGRRMCPGFGLAILHLEYFIANLVWRFEWKVVEGDGVDLSEKAEFTVVMDKPLKANIHPR 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4568111 4569655 + CmaCh20G009290.1 Cma20g00929 316743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00929 514 Pfam Cytochrome P450 31 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 Gene3D Cytochrome P450 24 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Cma20g00929 514 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00929 514 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 512 - -
Cma20g00929 514 PANTHER CYTOCHROME P450 4 512 - -
Cma20g00929 514 SUPERFAMILY Cytochrome P450 31 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01386 Cma-Chr17:9241617 Cma20g00929 Cma-Chr20:4568111 0 dispersed
Cma20g00927 Cma-Chr20:4543054 Cma20g00929 Cma-Chr20:4568111 0 dispersed
Cma20g00929 Cma-Chr20:4568111 Cma20g00931 Cma-Chr20:4577692 0 dispersed
Cma20g00928 Cma-Chr20:4560155 Cma20g00929 Cma-Chr20:4568111 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00929 K24184 - csv:101220777 821.617