Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00968 ATGGCGGTGGAGCTCCTCTCAGCCTTCACAAGCACCCAACTCTCCCCCTCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCACCGGCCTCCACACCCTCAAAAACCTCATCACATTACTCTCTCACTCTCATCCTTCAAATCTCGACTCCGATTGCCAAGCCGTCGCTGATTCCGCCGTCTCCCACTTCAAAAAGGCCATTTCTCTCCTCGGCCGCTCACCCAGAACCGGCCACGCTCGATTCCGTCGAGCCCCTTTGGATTCCTCTAAAATCTACAACGCCACGCCCATTCAACAAATCCCTCCGCCCGTTGAGCGCCTCGAATCCGCCACCACCATCAATTTCTCATACTCCTCTGCTCCAAATGGCTCGTTTTTGACCTCGATTCCTGGTGCCGACTCTGAAATTAACCTCCAACACGAACCCTCTTCCTCTTCTTTTCAGATTACCGATCTTTCCAGAGCTTCTTCTGGTCTCAAGAGGAAGTGCGGGTCTGAGAATTTGGGCTCCGGGAAGTGCTCTGTATCCTCCGGTGGTCGTTGCCACTGCCCTAAGAAGAGAAAAATGAGGTCAAAAAGGGTGGTGAGAGTGCCAGCCATAAGCTCAAAGAACGCTGATATTCCTCCGGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGCTATTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCTAGAAAGCACGTTGAGAGAGCCTCAGATGATCCAAGTATGTTAATAGTGACATACGAAGGCGACCATAATCACTCGCAATCTGTTGCAGAGGCCTCAAGTCTTATACTCGAATCCTGGTGA 849 50.88 MAVELLSAFTSTQLSPSMDQDSAVQEAATGLHTLKNLITLLSHSHPSNLDSDCQAVADSAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPVERLESATTINFSYSSAPNGSFLTSIPGADSEINLQHEPSSSSFQITDLSRASSGLKRKCGSENLGSGKCSVSSGGRCHCPKKRKMRSKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4913335 4915659 - CmaCh20G009680.1 Cma20g00968 316782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00968 282 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00968 282 SUPERFAMILY WRKY DNA-binding domain 205 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g00968 282 Pfam Plant zinc cluster domain 161 207 IPR018872 -
Cma20g00968 282 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00968 282 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g00968 282 Pfam WRKY DNA -binding domain 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00968 282 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 104 281 - -
Cma20g00968 282 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 92 - -
Cma20g00968 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 92 IPR044810 GO:0003700
Cma20g00968 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 104 281 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00963 Cma20g00968 CCT
Cma03g00963 Cma20g00968 ECH
Cma02g00489 Cma20g00968 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01820 Cma-Chr1:12075582 Cma20g00968 Cma-Chr20:4913335 9.87E-88 dispersed
Cma07g00689 Cma-Chr7:3032530 Cma20g00968 Cma-Chr20:4913335 3.31E-10 dispersed
Cma09g00254 Cma-Chr9:1067795 Cma20g00968 Cma-Chr20:4913335 4.81E-16 dispersed
Cma09g00530 Cma-Chr9:2358729 Cma20g00968 Cma-Chr20:4913335 1.29E-63 dispersed
Cma11g00350 Cma-Chr11:1730598 Cma20g00968 Cma-Chr20:4913335 1.26E-67 dispersed
Cma19g00062 Cma-Chr19:331030 Cma20g00968 Cma-Chr20:4913335 2.97E-52 dispersed
Cma02g00489 Cma-Chr2:2585531 Cma20g00968 Cma-Chr20:4913335 2.58E-172 wgd
Cma20g00968 Cma-Chr20:4913335 Cma03g00963 Cma-Chr3:6836165 7.45E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37048 PF03106 WRKY 2.40E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00968 - - bhj:120089490 502.286