Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00971 ATGAGCTGCCATTGGAGCTGCACAGTTCTTGCTTTTCTTCTTCTTCAATATTCTTGCTATGGACTGAATTTTGATGGGGTTCTCTTGCTTTCGTTCAAGTATGGCGTTTTGGACGACCCTCTTTTTGTTCTTCAGAACTGGAATTACTCCGATGAGACGCCCTGTTTATGGCGGGGAGTTCAATGCTCTGACGGTGGCGGCGGTGGCTCTAGAGTTACAGGTTTGTCTCTACAGAATTCTCAGCTCATGGGCTCTGTTTCTTCTGATCTGGGTCTGATTCAAAACCTTCAATCGGTTGATCTTTCTAACAATTCCTTTAATGGGTCTCTTCCCCTGTCTCTGTTTAACGCTACCATGCTCCGGTTTCTTGATTTGTCGGAGAATTTGATCTCTGGTGAGGTTCCGGCGGCGGTGGGTGGACTTGGGAATCTGCAAGTTCTTAACCTCTCTGGTAATGCTTTGGTCGGGAAGTTTCCGGGTGATCTTGCGGATTTGGGTAATCTTACGGTTGTGTCTCTGAAGAACAATTACATTTCCGGTGAAATTCTTGGTGGGTTTAAAACGGTGGAGGTTTTGGATCTGTCTTCTAATTTGATTGATGGAGCTTTGCCGTCTGATTTTGGTGGCGACAATTTACGTTATTTCAACATCTCGTACAACAAACTATCCGGCAAAATCCCGCCGGATTTCGCTCATAATATTCCGGCCAACGCCACTATTGATCTCTCCTTCAATAACCTCACTGGAGAAGTCCCTGTTTCTGATGTGTTCATGAACCAAGAAGCAAAATCCTTCACCGGAAATCGCCATCTTTGCGGCGAGTTAATGACAACCCCATGCCCAATTCCTTCTTCGGCGGCGTCTCTCCCGCCGGCGATCGCTGCCATTCCACTAGACCGAAGTACTCCAGAAACGACATCGCCGGAAAAACAGAGCGAAACACGGTTCAAACCCTCAACAATCGTCGCCATTGTACTGGGAGATATTGTCGGATTGGCAATTCTGTTCCTCCTCTTCTTCTACGTCTATCACTTGAAGAGAAAAAACAAATCCGTCGAAACCCATTTGAAAAACGAAGCCAATTTGGCCAAAGAGAGCTTCTCCACATCCTCATCGGAATCCAGAGGAGTTTCCCGATGGTCCTGTTTAAGAAAAACAGAGGACCCAGAAGAGGGAAATTCCGATCAGGCGAGTGCCGTGTCAATCCCCGGCCACCGTGAGACGGCAGAGGAGGGAGGAGACGGGAACAGAAAGGGGACTTTGGTAACGGTAAACGGCGGAGAGAAGGAGCTGGAACTGGAGGCGCTGCTGAAAGCATCAGCGTACATCCTCGGCGCCACCGGATCAAGCATAACATACAAAGCAGTGCTGGAAAACGGGACGGCGTTTGCCGTGAGAAGAATCGGAGACGGCGGAGTGGAAAAATTCAAAGATTTCGAGAATCAAATTCGTGTCGTAGCTAAATTGGTTCATCCAAATTTGGTTCGTGTTCGTGGGTTTTATTGGGGCGTCGATGAAAAGCTCATCATTTATGATTTTGTTCCTAATGGAAGCCTTGCCAATGCTCGTTACAGGAAAGTGGGTTCGTCGCCTTGTCATCTTCCATGGGAGCCTCGATTGAGAATAGCCAAAGGAGTAGCTCGTGGCCTTTCTTATCTCCATGACAAGAAGCATGTCCATGGCAACTTGAGGCCCACCAACATTCTTTTGGGTTTCGATATGGAGCCCAAGATCGGCGATTTCGGTCTCGAGAAGCTCTTCTTGGGCGACTCGAGTTACAAGCCTGGTGGCTCAACTCGAAATTTCGGGAGTAAACGGTCTACTGCATCTCGAGATAGCTTCCAAGATTTCGTCACTGGACCAAGTCCAAGCTCGATTAATGGAGTGTCACTTTACTTGCCACCAGAGTCGCTTCGGAGCTTGAAGCCCAATCCAAAATGGGATGTGTACTCATTTGGAGTGATATTGCTTGAGCTATTGACAGGAAAGATCATCGTGTTGGATGAGTTGAGCCAGGTGCTTGGTCTTGCAGTCGAAGATAAGAGTCGAGCCCTAAAAATGACTGACATAGCGATTCGAGGTGAGATGGAGGGGAAAGAAGAAGCTTTATTGTCTTGCTTTAAATTAGGATATAGTTGTGCATCACCTAACCCACAAAAGAGACCATCCATGAAAGAATGCTTGCAAGTTTTGGAGAAATTTCCAACCATATCCACTTCATCACACTATTATGGTCTCTAA 2241 47.12 MSCHWSCTVLAFLLLQYSCYGLNFDGVLLLSFKYGVLDDPLFVLQNWNYSDETPCLWRGVQCSDGGGGGSRVTGLSLQNSQLMGSVSSDLGLIQNLQSVDLSNNSFNGSLPLSLFNATMLRFLDLSENLISGEVPAAVGGLGNLQVLNLSGNALVGKFPGDLADLGNLTVVSLKNNYISGEILGGFKTVEVLDLSSNLIDGALPSDFGGDNLRYFNISYNKLSGKIPPDFAHNIPANATIDLSFNNLTGEVPVSDVFMNQEAKSFTGNRHLCGELMTTPCPIPSSAASLPPAIAAIPLDRSTPETTSPEKQSETRFKPSTIVAIVLGDIVGLAILFLLFFYVYHLKRKNKSVETHLKNEANLAKESFSTSSSESRGVSRWSCLRKTEDPEEGNSDQASAVSIPGHRETAEEGGDGNRKGTLVTVNGGEKELELEALLKASAYILGATGSSITYKAVLENGTAFAVRRIGDGGVEKFKDFENQIRVVAKLVHPNLVRVRGFYWGVDEKLIIYDFVPNGSLANARYRKVGSSPCHLPWEPRLRIAKGVARGLSYLHDKKHVHGNLRPTNILLGFDMEPKIGDFGLEKLFLGDSSYKPGGSTRNFGSKRSTASRDSFQDFVTGPSPSSINGVSLYLPPESLRSLKPNPKWDVYSFGVILLELLTGKIIVLDELSQVLGLAVEDKSRALKMTDIAIRGEMEGKEEALLSCFKLGYSCASPNPQKRPSMKECLQVLEKFPTISTSSHYYGL 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4949033 4951867 - CmaCh20G009710.1 Cma20g00971 316785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00971 746 Gene3D Phosphorylase Kinase; domain 1 417 513 - -
Cma20g00971 746 SUPERFAMILY Protein kinase-like (PK-like) 443 734 IPR011009 -
Cma20g00971 746 CDD STKc_IRAK 444 734 - -
Cma20g00971 746 MobiDBLite consensus disorder prediction 386 420 - -
Cma20g00971 746 Pfam Protein kinase domain 444 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00971 746 Gene3D Transferase(Phosphotransferase) domain 1 514 742 - -
Cma20g00971 746 PANTHER BNAC07G16060D PROTEIN 5 736 - -
Cma20g00971 746 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cma20g00971 746 SUPERFAMILY L domain-like 27 273 - -
Cma20g00971 746 Pfam Leucine Rich Repeat 211 232 IPR001611 GO:0005515
Cma20g00971 746 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Cma20g00971 746 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Cma20g00971 746 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 736 - -
Cma20g00971 746 ProSiteProfiles Protein kinase domain profile. 438 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00491 Cma20g00971 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00474 Cma-Chr4:2417923 Cma20g00971 Cma-Chr20:4949033 0 dispersed
Cma16g00345 Cma-Chr16:1611109 Cma20g00971 Cma-Chr20:4949033 0 dispersed
Cma18g00997 Cma-Chr18:8398722 Cma20g00971 Cma-Chr20:4949033 9.00E-132 dispersed
Cma20g00971 Cma-Chr20:4949033 Cma04g01825 Cma-Chr4:9208413 5.44E-117 dispersed
Cma02g00491 Cma-Chr2:2599082 Cma20g00971 Cma-Chr20:4949033 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69401 PF00069 Pkinase 7.10E-29 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00971 - - bhj:120088533 1254.2