Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00975 ATGGATTTTCTCTCTGTTTTCCTGCTCCTCCTTCTTGTTTTCCTTTTCCTGCAACAATTCATTACCCGCCGGCGAAATCTCCCACCGAGCCCACCGTCTGTTCCGATCATCGGCCATCTCCACCTCCTTCAACGACCAATCCACCAGAACTTCCACAACATCGCCGCCAAATACGGACCCATTTTCACTCTCCGATTCGGATCTCGCCTTGCCCTCATAGTCTCTTCACTCCAACTAGCCGAAGAATGCTTCACCAAAAACGATGTCGTTTTCGCCAACCGTCCTCGTTTGCTCATCGGCAAATACCTCGGCTACAACTTCACCACCATCTCCACCACACCTTACGGCGACCTCTGGCGAAACCTTCGTCGGCTCACCTCTATGGAAGTCTTTTCCACGGCGCGTCTCAACGCAGCTCTCAGCATCCGTAAGGATGAAATCCGGCGATTGTTGGTCAAACTCCATTCCGAATCGTTTGCTAAAGTGGAGTTGAAATCGATGTTTTCAGAATTGAGTTTCAACGTTGTGATGAGGGTTGTGACCGGAAAACGGTACTTCGGAGAGGAGGTTTCCAATGAAACAGAGGCGAGGGAGTTCAGAGAGCTTATGGATGAAATATCGCGTCATGGAGGAGCGTCGAATTGGATCAATTTCATGCCGATTTTGAAATGGATTGGGTTTGGTGAATATGAGAAGAGTTTGGCCAAATTAACGAAAAGGGCCGATAAATTTATGCAGAAATTGGTTGAATATCGCCGGAATCAGACAGGATTTGAAATAGAAAAACAGAGTACTCTGCTTGATCGGCTTCTGGAACTTCAGGCATCTGAGCCGGAATATTACTCCGATGAGATCATCAAAGGGGTCGTTCTGGTTTTGTTGCGTGCCGGAGTTGACTCAACCTCTGTGACCATGGAATGGGCAATGACTCAATTACTCAACAATCCGGAGGTGATATCCAAAGCCAAAGCCGAGATCGATACCAAGATCGGTCGAGATCGACTCGTTGATGAATCAGATCTCGCCAACCTCCACTACCTTCAAGCCATTATTTATGAGACCTTCCGATTGCACCCTGCAGCGCCGATGCTCCTCACACACTATTCCTCCGATGACTGCACCGTCGCAGGCTACGACATTCCTCGTGGGACGATGTTGATGGTCAATGCTTGGGCAATTCATAGAGACCCCAAGCTGTGGGATGACCCCATGAGCTTCCGACCTGAGAGATTCTTAGGGGCAGGGAATGAGTTGCTGTCGAACAAGTTAGTTCCTTTTGGGATGGGAAGGAGGGCTTGTCCTGGGGAAACTATGGCGCAAAGGTTAATAGGATTGAGTTTGGGGCTATTGATTCAGTGTTATGAGTGGAAGAATGTTGGATATCAAAAGGTAGACATGACTGAAGGTGGAGGTATCACCATTCAAAAAGTTCAGCCTCTGGAAACCATGTGTAGAGCTCTCCCAATTATGGATAAAGTTCTATCAAATGGTTTGGACTAA 1500 47.87 MDFLSVFLLLLLVFLFLQQFITRRRNLPPSPPSVPIIGHLHLLQRPIHQNFHNIAAKYGPIFTLRFGSRLALIVSSLQLAEECFTKNDVVFANRPRLLIGKYLGYNFTTISTTPYGDLWRNLRRLTSMEVFSTARLNAALSIRKDEIRRLLVKLHSESFAKVELKSMFSELSFNVVMRVVTGKRYFGEEVSNETEAREFRELMDEISRHGGASNWINFMPILKWIGFGEYEKSLAKLTKRADKFMQKLVEYRRNQTGFEIEKQSTLLDRLLELQASEPEYYSDEIIKGVVLVLLRAGVDSTSVTMEWAMTQLLNNPEVISKAKAEIDTKIGRDRLVDESDLANLHYLQAIIYETFRLHPAAPMLLTHYSSDDCTVAGYDIPRGTMLMVNAWAIHRDPKLWDDPMSFRPERFLGAGNELLSNKLVPFGMGRRACPGETMAQRLIGLSLGLLIQCYEWKNVGYQKVDMTEGGGITIQKVQPLETMCRALPIMDKVLSNGLD 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5068868 5070367 - CmaCh20G009750.1 Cma20g00975 316789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00975 499 Coils Coil 234 254 - -
Cma20g00975 499 Gene3D Cytochrome P450 16 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 492 - -
Cma20g00975 499 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 4 492 - -
Cma20g00975 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Cma20g00975 499 Pfam Cytochrome P450 28 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 171 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 SUPERFAMILY Cytochrome P450 28 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00975 499 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00975 Cma-Chr20:5068868 Cma20g00978 Cma-Chr20:5097701 0 dispersed
Cma20g00975 Cma-Chr20:5068868 Cma20g00976 Cma-Chr20:5079793 6.46E-16 tandem
Cma20g00975 Cma-Chr20:5068868 Cma03g00950 Cma-Chr3:6782028 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00975 K13260 - csv:101210967 761.14