Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00977 ATGGATATTATCTTCCTTTCCATTTCCCTCTCTATGCTATCTATCTTTCTTGCCTTCATCTTTCTTCTTCGACCACCTCGCCAAAACCTTCCACCAACCCCATTTTTTTCTCTTCCAATTATTGGTCATCTCCATCTCATCAGACACCCTCTCCATCGAATCCTTCACAACCTCTCCAAAACCTATGGACATGTCTTCTCCCTCCGATTCGGTTCACGGATCGTTGTAGTTGTATCATCGCCTTCGGTCGTACAAGAATGCTTTACAAAGAACGATATTGTTCTTGCAAATCGCCCATTGTTGGGCACCGGAAAGCACTTAGCATACAACCATACCACCATGGCCGTCGCCCCTTATGGCGATCACTGGCGAAACCTTCGTCGAATCGGTGCCCTCGAGATTTTCTCTACGAGTCGGCTAAATCTATTCTTGGGAATTCGAGAGGACGAAGTTAAACGCTTGATGCTTAGATTACGTGGGAGTTCGTCAGAAGAATTCACTCTAGTCGAGCCCGAGACCATGTTCTTAGATCTTATGTACAATGTTATTATGAGAATGGTGGCGGGGAATAAGCCTTACGAACACGATAAGGGACGATCGAGGGAATTTAGAGAGCTCGTGACAAAGATTATGGCGGTTGGTGGGACAACAAATCCAGGAGACTTCATACCAATATTGAATTGGATTGATCCCACAGGTTTGGAGAAGAAGATTATGAAGCTTGGACGGAAAATGGATGAACTTCTTCAAGAATTAGTTGATGGGATAAGATATCAAAAGGGTGCAGGAAACACTATGATTGATCGCTTACTTCATTTGCAAAAAACTGAGCCTCAAAATCATACCGACCAAATTATCAAAGGCCTAATACAAATCACATTAATAGCAGGGATTGACACAACAGCGGTAACCTTAGAATGGGCGCTCTCACATCTACTCAACAATCCAGAGGTTTTGGAGAAAGCAAAAGTCGAGATAGACAGTTCCATTGGACAAGAGCGTCTAGTCAACGAAGCCGATTTGTCGAGTTTGAACTACCTGCAAGGAATAATTTCGGAGACTCTAAGGTTGACCCCAGCAGCTCCTTTGCTAGTGCCACATTGCGCTTCTAAAGACACTAAAATTGGAGGGTATGATGTACCACGTGAGACGATTGTATTGATTAATGCTTGGGCTATTCATAGAGATCCAAGCCTTTGGGAAGATGCCACCCGTTTTAAGCCTGAAAGGCATGCAAACCCTATTGGAATTGACTCATATAAATTTCTACCATTTGGGTTGGGGAGGAGAGCCTGCCCTGGAGTAGGAATAGCTCAACGAATGGCTACCTTAACTTTGGGAATGTTGATTCAATGCTTTGAGTGGGAAAGAGAGGGCAGCTCGTTGGTTGATATGAGTGAAGGTGAAGGGGTTACTATGCCCAAAGCTCAACGATTGGTAGCAAAGTGTAAACCACGTCCGATCATGAAAACCATTTTTAACGAAGCAGTTCTATCACAATATCCGAAAAGAATGTGA 1518 43.74 MDIIFLSISLSMLSIFLAFIFLLRPPRQNLPPTPFFSLPIIGHLHLIRHPLHRILHNLSKTYGHVFSLRFGSRIVVVVSSPSVVQECFTKNDIVLANRPLLGTGKHLAYNHTTMAVAPYGDHWRNLRRIGALEIFSTSRLNLFLGIREDEVKRLMLRLRGSSSEEFTLVEPETMFLDLMYNVIMRMVAGNKPYEHDKGRSREFRELVTKIMAVGGTTNPGDFIPILNWIDPTGLEKKIMKLGRKMDELLQELVDGIRYQKGAGNTMIDRLLHLQKTEPQNHTDQIIKGLIQITLIAGIDTTAVTLEWALSHLLNNPEVLEKAKVEIDSSIGQERLVNEADLSSLNYLQGIISETLRLTPAAPLLVPHCASKDTKIGGYDVPRETIVLINAWAIHRDPSLWEDATRFKPERHANPIGIDSYKFLPFGLGRRACPGVGIAQRMATLTLGMLIQCFEWEREGSSLVDMSEGEGVTMPKAQRLVAKCKPRPIMKTIFNEAVLSQYPKRM 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5083694 5086171 - CmaCh20G009770.1 Cma20g00977 316791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00977 505 SUPERFAMILY Cytochrome P450 31 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 Pfam Cytochrome P450 32 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 Gene3D Cytochrome P450 23 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00977 505 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 492 - -
Cma20g00977 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Cma20g00977 505 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 8 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00977 Cma-Chr20:5083694 Cma20g00980 Cma-Chr20:5112338 0 dispersed
Cma20g00976 Cma-Chr20:5079793 Cma20g00977 Cma-Chr20:5083694 2.96E-18 tandem
Cma20g00977 Cma-Chr20:5083694 Cma20g00978 Cma-Chr20:5097701 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00977 K13260 - csv:101204413 770.385