Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00978 ATGGCTCATATCTTGCTTTACATTTTCCTCTTTCCGATCACTCTCCTTTTAGCCCTCAAGTTCTTCCCACGCCATGGCAAAAACCTCCCACCAACCCCACTTTTTTCCCTTCCCATAATAGGCCATCTCCATCTCCTCAAACACCCCATCCACCGGACACTTCACCAGCTTTCAAACAAGCATGGCCATGTCTTCTCTCTCCGATTCGGATCCCGTCTGGTCGTCGTCGTATCATCTCCTTCCGCCGTTCATGAATGCTTCACAAATAATGACATCGTTCTTGCAAATCGACCATTTTTGAACACGGGAAAGCACTTGACGTATAACTTCACGGTACTAGCCGTCGCCCCTTACGGTGAGCTTTGGCGTACCCTTCGCCGCATTAGTACTCGTGAGATTTTCTCGACATGTCGACTTGATTTGTTCTTGGGAATTCGACAAGAGGAAGTGAAGCGATTGTTGTGTAAACTATGTCGTGGTAATACTGTTGTTGTCGAGGTTCAGCCTATGATTATGGATCTTACATCGAATATTGTGATGAGGATGGTTGCGGGGAAGAGGTATTTTGGAGACGATGTGTCGGATGAAGAACAAGCGGAGAGATTTAGAGATGTTGTGAAGAGAGTAATGTTGTATGCTGGGGCAACAAATCCAGGAGATTTCATACCCTTATGGAATTGGATTGATCCAAGTGGTTTTGAGAAGAAGATTATGAAGGTTGGAGAAGAAGCTGATGCTATCTTTCAAGGCTTGATTGATGAGATTAGGAACCAAAAAGGAAGTGGTAATACGATGATTGATCATTTGCTTCACTTGCAGACCACACAATCTGAATACTTCAGCGACCAAATTATCAAAGGCCTCATACATGTTATACTCTTAGCAGGAATCGATACAACAGCCGTGACATTAGAATGGGCACTCTCGCACCTGCTGAACAATCCAGAGGTGATAAAGAAAGCGAGGTTTGAGATAGAGCGTTGCACAGGACAAGACCGTCTAGTCAATGAAGAGGATTTGTCGAGTTTGAGTTATGTGCAAGGAATAATCTTAGAGACATTGCGGCTGACCCCAGCAGCTCCTTTGCTCGTGCCACACTGCGCATCTACAGATTGTAAAATCCAAGGCTATGATGTGCCACGTGACACGATCATATTTGTTAACGCTTGGGCGATACATCGAGATCCAAATCATTGGGAAGATGTCACAAGTTTTAGGCCTGAGAGGCATGAAAATGCAATAGAGTTATCTGATTCATACAAATTGTTACCATTCGGGTTGGGGAGGAGAGCGTGCCCGGGTGTAGGAATGGCGCAACGCATTGTTGGCTTGACCTTGGCTTCATTGATTCAATGCTTTGATTGGGAAAGAATGGATAGCTCACTAGTTGACATGACGGAAGGCCAAGGGATCACTATGCCAAAAGCTCAGCCGTTGGTAGCCAAGTGCAGACCACGCCCTATCATGAGAGCTCTTATTAGTGAAGCAATTCACCCTGTTTAG 1503 45.24 MAHILLYIFLFPITLLLALKFFPRHGKNLPPTPLFSLPIIGHLHLLKHPIHRTLHQLSNKHGHVFSLRFGSRLVVVVSSPSAVHECFTNNDIVLANRPFLNTGKHLTYNFTVLAVAPYGELWRTLRRISTREIFSTCRLDLFLGIRQEEVKRLLCKLCRGNTVVVEVQPMIMDLTSNIVMRMVAGKRYFGDDVSDEEQAERFRDVVKRVMLYAGATNPGDFIPLWNWIDPSGFEKKIMKVGEEADAIFQGLIDEIRNQKGSGNTMIDHLLHLQTTQSEYFSDQIIKGLIHVILLAGIDTTAVTLEWALSHLLNNPEVIKKARFEIERCTGQDRLVNEEDLSSLSYVQGIILETLRLTPAAPLLVPHCASTDCKIQGYDVPRDTIIFVNAWAIHRDPNHWEDVTSFRPERHENAIELSDSYKLLPFGLGRRACPGVGMAQRIVGLTLASLIQCFDWERMDSSLVDMTEGQGITMPKAQPLVAKCRPRPIMRALISEAIHPV 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5097701 5099797 + CmaCh20G009780.1 Cma20g00978 316792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00978 500 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 491 - -
Cma20g00978 500 Pfam Cytochrome P450 30 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS P450 superfamily signature 348 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 347 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 388 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 7 491 - -
Cma20g00978 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Cma20g00978 500 SUPERFAMILY Cytochrome P450 30 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00978 500 Gene3D Cytochrome P450 23 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00951 Cma-Chr3:6785337 Cma20g00978 Cma-Chr20:5097701 0 dispersed
Cma08g00036 Cma-Chr8:187633 Cma20g00978 Cma-Chr20:5097701 0 dispersed
Cma17g01387 Cma-Chr17:9243802 Cma20g00978 Cma-Chr20:5097701 4.09E-179 dispersed
Cma20g00975 Cma-Chr20:5068868 Cma20g00978 Cma-Chr20:5097701 0 dispersed
Cma20g00978 Cma-Chr20:5097701 Cma20g00980 Cma-Chr20:5112338 0 proximal
Cma20g00977 Cma-Chr20:5083694 Cma20g00978 Cma-Chr20:5097701 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00978 K13260 - csv:105434396 835.099