Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00979 ATGCATCCCGATGATCAGCGTTGGCAGCCGTTGTTGGAGGAGGAAGATGAAGAAACTGCTTACAATTTAACGGAGAAGGTTGTGGTTGTTGGGATCGACGAAGCGGAGTCCGATTTGGATGTGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACGGGGCCTGGGTTTTTGATGAGTATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACAGCCATGGGGCTTTTGATCCAGTTGCTCTCGGCCAGGCTTGGTGTTGCCACTGGCAAGCACTTGGCCGAGCTTTGTAGAGAAGAGTACCCGTCTTGGGCGAGAATTTTGCTGTGGGTCATGGCAGAGTTAGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATTAAGATTTTGAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTTATAATCACTGCTTTTGATTGTTTTATCTTCCTGTTTCTTGAGAACTATGGTGTGAGGAAACTTGAGGCTGTTTTTGCTGTTCTTATTGCTACTATGGCACTCTCATTTGCTTGGATTTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCAGTAGCTGTTGTGGGGTGTATCATTATGCCTCATAATGTGTTTCTTCACTCCGCTCTCGTGCAGTCACGAGACGTCAATCCGAGCAAGAAAGGGCGGGTTCGAGAAGCTCTTAGATACTATTCCATTGAGTCCACTCTTGCTCTTTTTGTGTCCTTCATCATCAACTTGTTTGTTACAACTGTATTTGCTAAAGCTTTCTATGGCACAGACATAGCTAGTAGCATTGGTCTTGTAAATGCAGGGCAATATCTTCAAGATAAATATGGTGGAGGGCTCTTCCCCATTTTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGGGTGGCTTCTTGAACTTGAAGTTGAAAAAATGGCTCAGAGCTTTGATTACTCGAAGCTTTGCGATTGTGCCAACTATGATTGTCGCTCTCGTGTTCGAAACTTCTGATTCGATGGTCGATGTTCTTAATGAATGGCTCAATGTCCTTCAGTCAATTCAGATACCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCCAAGGAACATCTAATGGGCAGTTTCAGAATTGGCCCCATTTTAAAGCTGTCCTCTTGGCTAGTGGCAGTCTTGGTGATGGCCATCAACGGGTATCTTTTGGTGAGCTTCTTCTCATCAGAAGTGAACGGAGTAATCGTTGCCATTTTCGTGTTCGTCTTCATCGCTGCATATCTCTCCTTTGTCGTTTACCTCGTCTATCGAAGCATCTCGTTTTCAAGTTGGCACAGCTTCATTAACCGGAAGACTTCCACGGACAACGAAAACTGA 1533 45.34 MHPDDQRWQPLLEEEDEETAYNLTEKVVVVGIDEAESDLDVGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGKHLAELCREEYPSWARILLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITAFDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWIFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVNPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALVFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGSFRIGPILKLSSWLVAVLVMAINGYLLVSFFSSEVNGVIVAIFVFVFIAAYLSFVVYLVYRSISFSSWHSFINRKTSTDNEN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5105933 5109238 + CmaCh20G009790.1 Cma20g00979 316793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00979 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma20g00979 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 508 - -
Cma20g00979 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02382 Cma-Chr4:16477866 Cma20g00979 Cma-Chr20:5105933 7.55E-109 dispersed
Cma14g01056 Cma-Chr14:5585112 Cma20g00979 Cma-Chr20:5105933 4.24E-104 dispersed
Cma02g00504 Cma-Chr2:2694430 Cma20g00979 Cma-Chr20:5105933 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00979 K21398 - csv:101211711 927.932