Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00979 | ATGCATCCCGATGATCAGCGTTGGCAGCCGTTGTTGGAGGAGGAAGATGAAGAAACTGCTTACAATTTAACGGAGAAGGTTGTGGTTGTTGGGATCGACGAAGCGGAGTCCGATTTGGATGTGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACGGGGCCTGGGTTTTTGATGAGTATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACAGCCATGGGGCTTTTGATCCAGTTGCTCTCGGCCAGGCTTGGTGTTGCCACTGGCAAGCACTTGGCCGAGCTTTGTAGAGAAGAGTACCCGTCTTGGGCGAGAATTTTGCTGTGGGTCATGGCAGAGTTAGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATTAAGATTTTGAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTTATAATCACTGCTTTTGATTGTTTTATCTTCCTGTTTCTTGAGAACTATGGTGTGAGGAAACTTGAGGCTGTTTTTGCTGTTCTTATTGCTACTATGGCACTCTCATTTGCTTGGATTTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCAGTAGCTGTTGTGGGGTGTATCATTATGCCTCATAATGTGTTTCTTCACTCCGCTCTCGTGCAGTCACGAGACGTCAATCCGAGCAAGAAAGGGCGGGTTCGAGAAGCTCTTAGATACTATTCCATTGAGTCCACTCTTGCTCTTTTTGTGTCCTTCATCATCAACTTGTTTGTTACAACTGTATTTGCTAAAGCTTTCTATGGCACAGACATAGCTAGTAGCATTGGTCTTGTAAATGCAGGGCAATATCTTCAAGATAAATATGGTGGAGGGCTCTTCCCCATTTTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGGGTGGCTTCTTGAACTTGAAGTTGAAAAAATGGCTCAGAGCTTTGATTACTCGAAGCTTTGCGATTGTGCCAACTATGATTGTCGCTCTCGTGTTCGAAACTTCTGATTCGATGGTCGATGTTCTTAATGAATGGCTCAATGTCCTTCAGTCAATTCAGATACCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCCAAGGAACATCTAATGGGCAGTTTCAGAATTGGCCCCATTTTAAAGCTGTCCTCTTGGCTAGTGGCAGTCTTGGTGATGGCCATCAACGGGTATCTTTTGGTGAGCTTCTTCTCATCAGAAGTGAACGGAGTAATCGTTGCCATTTTCGTGTTCGTCTTCATCGCTGCATATCTCTCCTTTGTCGTTTACCTCGTCTATCGAAGCATCTCGTTTTCAAGTTGGCACAGCTTCATTAACCGGAAGACTTCCACGGACAACGAAAACTGA | 1533 | 45.34 | MHPDDQRWQPLLEEEDEETAYNLTEKVVVVGIDEAESDLDVGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGKHLAELCREEYPSWARILLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITAFDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWIFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVNPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALVFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGSFRIGPILKLSSWLVAVLVMAINGYLLVSFFSSEVNGVIVAIFVFVFIAAYLSFVVYLVYRSISFSSWHSFINRKTSTDNEN | 510 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 5105933 | 5109238 | + | CmaCh20G009790.1 | Cma20g00979 | 316793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00979 | 510 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 8 | 508 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | Pfam | Natural resistance-associated macrophage protein | 72 | 433 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 130 | 156 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 160 | 179 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 185 | 206 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 234 | 257 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 341 | 360 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 369 | 386 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 403 | 422 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | Hamap | Divalent metal cation transporter MntH [mntH]. | 37 | 459 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 | |
Cma20g00979 | 510 | PANTHER | METAL TRANSPORTER NRAMP3 PROTEIN | 8 | 508 | - | - | |
Cma20g00979 | 510 | TIGRFAM | nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 49 | 427 | IPR001046 | GO:0016020|GO:0030001|GO:0046873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02382 | Cma-Chr4:16477866 | Cma20g00979 | Cma-Chr20:5105933 | 7.55E-109 | dispersed | |
Cma14g01056 | Cma-Chr14:5585112 | Cma20g00979 | Cma-Chr20:5105933 | 4.24E-104 | dispersed | |
Cma02g00504 | Cma-Chr2:2694430 | Cma20g00979 | Cma-Chr20:5105933 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00979 | K21398 | - | csv:101211711 | 927.932 |