Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00980 ATGGATATTCTCTTGCTTTCTATTTCTCTCTTCCTATTTACTCTTCTCTTTGCCTCCAATTTTGTGCTGAAACCACATCGCTTGAAACTCCCACCAACCCCTCTCTTATGTCTTCCACTAATAGGCCATCTCCATCTCCTCAACCATCCCATCCATCGAACACTCACCAACCTTTCTCAAAAATACGGCCATGTCTTCTCTCTCCGATTTGGTTCCCGTCTCGTTATTGTCATTTCTTCTCCTTCTGCCGTACAAGAATGCTTCACAAAGAACGATATTGCTCTTGCAAATCGCCCATTGTTGAACTCTGGAAAGTACCTAGACTACAACTATACCGTCATGTCAGTCTCCCCTTACGGTGAACATTGGAGAAACCTCCGCCGGATTGTCTCCCTTGAGATCTTCTCAACAAATCGCCTCAATTTTTTCTTGGGCGTTCGGGGAGAGGAAATCAAATGTTTGCTATGTAAATTATGTGGGAATTTATTGGAAGATCGATTTAGGGTCGTGGAATTGGAGCCCATGTTGCTTGATCTTATGTTCAATATTGTTATGAGAATGTTGGCTGGGAAGAAGTCTTTTGAAGGACATTCTTACAAGTTTAAAGAAATGGTGACACATATTATGGCTCATAGTGGAGCAACCAATCCAGCAGACTTCATACCCTTATGGGGTTTCATTGATCCAACCGGTTTTGGGAAGAGGGGAAAGAAGCTTGCAAAGACATCTGATGAACTCCTTCAAGAGTTACTCGATGAAATTCGAGATAAAGAAGATGGAGGGAACACTATGATTCATCGTTTACTTAGCTTGCAGAATACCGAGCCTGAATATTATAGCGATCAAATTATCAAAGGATTGATTCAAGATATATTATTAGCCGGGATTGACACGTTAGTTGTGACATTGGAGTGGGCATTATCTCAATTGCTCAACAATCCAGAGGTGTTGGAGAAAGCAAGAGCTGAGATAGACAGTTCGATTGGGTACGAGCGTTTAGTTAACGAAGCTGATCTGCCGAGTTTGAGTTATGTTCAAGGAATAATCTCTGAGACTTTAAGGCTTCACCCAGCTGCTCCTCTTCTTTTGCCGCATTGTGCATCTGAAGAATGCAAAATAGAAGGATATGATGTTCCTCGTGATACGATAATATTGATCAATGCTTGGGCTATGCATAGAGACCCGAATCTATGGGAAGATGCTACCAGCTTTAAACCTGAAAGGCATGCAAATGGGATGAAGAATGGAGCAGAGTCATACAAACTGATACCATTTGGGTTGGGGAGGAGAGCTTGTCCTGGTTTGGGAATGGCGCAACGAGTGGCTGGCTTGACTTTAGCATCGTTGATACAAGGGTTTGAATGGGAAAGATTGAACAACTCGTTAGTTGACATGAGTGAAGGTAAAGGGATTACAATGCCCAAAGCTCAACCCTTGGTGGCTAAGTGTAAACCACGCCCCATCATGAAACTCGTTTATGAATCTGGCAATTGA 1494 42.57 MDILLLSISLFLFTLLFASNFVLKPHRLKLPPTPLLCLPLIGHLHLLNHPIHRTLTNLSQKYGHVFSLRFGSRLVIVISSPSAVQECFTKNDIALANRPLLNSGKYLDYNYTVMSVSPYGEHWRNLRRIVSLEIFSTNRLNFFLGVRGEEIKCLLCKLCGNLLEDRFRVVELEPMLLDLMFNIVMRMLAGKKSFEGHSYKFKEMVTHIMAHSGATNPADFIPLWGFIDPTGFGKRGKKLAKTSDELLQELLDEIRDKEDGGNTMIHRLLSLQNTEPEYYSDQIIKGLIQDILLAGIDTLVVTLEWALSQLLNNPEVLEKARAEIDSSIGYERLVNEADLPSLSYVQGIISETLRLHPAAPLLLPHCASEECKIEGYDVPRDTIILINAWAMHRDPNLWEDATSFKPERHANGMKNGAESYKLIPFGLGRRACPGLGMAQRVAGLTLASLIQGFEWERLNNSLVDMSEGKGITMPKAQPLVAKCKPRPIMKLVYESGN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5112338 5114432 + CmaCh20G009800.1 Cma20g00980 316794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00980 497 Gene3D Cytochrome P450 22 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 492 - -
Cma20g00980 497 SUPERFAMILY Cytochrome P450 31 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 7 492 - -
Cma20g00980 497 Pfam Cytochrome P450 32 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00980 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00505 Cma-Chr2:2704533 Cma20g00980 Cma-Chr20:5112338 0 dispersed
Cma20g00977 Cma-Chr20:5083694 Cma20g00980 Cma-Chr20:5112338 0 dispersed
Cma20g00980 Cma-Chr20:5112338 Cma03g00950 Cma-Chr3:6782028 1.34E-169 dispersed
Cma20g00978 Cma-Chr20:5097701 Cma20g00980 Cma-Chr20:5112338 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00980 K13260 - mcha:111017884 693.345