Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00982 ATGGAACGGAAACGGATGTGGAATAGGCGAAATCTGGGTCGTGGGTTTCGCGAGAGAGGCCCCCTGAACCAACATCTTCTCATCTCTGTTCTACGTTTCTTTGCTGCATTTCTGATGCCGCTTCTGCCGATTGTTTCTGGGTTTGATCCGATCAAACAAGGTGCAATGGGGGTATCACTCCTCAAAGTACTTCTCAGACATATTTCATCATTTCTTCAACTTTCATCTACTGACTTCATAAATTTACAACCAACTCTGAAGTACTTCCACAAAATAGAAGGGATCTTCAAACTATTGAGACCAATACTAGATGCAGTTGTTGATTCAGATATAGCTTCCGATGAAGAGCTTACTAAGGCGTTTGAAAAACTCGATCATTCAATTGATGAACTAAGGGCGCTCTTAGAAAATTGGCAACTGTTGTCGAGTAAAGTATACTTTGTATTGCAAAGTGAAGCATTGATATCAAAGATTGGGAAATCTTGCTTAGATATATTCCAGCTTTTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAGCATCTCTTGAGCACTGCGTCCAAAAAATTAAGCATTTTGGAAAGGAAGAAATATCTTCCGTTATTAAAGATGCCATAAGGAATGAAGTAGAGGGCATTGCACCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTTTCTGATCTTGAGATCAAATCAGGAGATCTTAATTGAGGCTGTAGCACTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCCGAAAATTCTGAAGAAGCTGAGGGCATTGATCAAATGATTGCTCTTGTAACCCATTTGCATGAACGGTTTATTATAATAAATCAATCCCAAAATTCTAGTCCTGTATCAATTCCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTGATGACAGATCCAGTTATTGTAGCATCGGGGCAGACGTACGAGCGGGTATTTATTAAAAATTGGATCGATCTGGGGCTCAATGTTTGCCCGAAGACTAGACAGACATTGCTTCACACGAATCTTATACCGAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTTAAATTGTCTGATCCCTCGAGGTCAGTGAACTTAAACCAGCTTTCGCCTGTTCTTGCTGGGAACTTTGAGTCTGATACCCATCGAGAGCCCGTTTTTCCTCATTCCCCTGGTTACCAACCGATGTCCCCGCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACATGAACTCGCTTGGGGTAAGCTATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTATCAAATGATGCTGGTGATGAACGTGAGATTGATGTTAGTAGACTGTTGCTATCAAGCTCGGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTACGATTTGGTTGCTAAACCGTCTACGTCACCATCTAAAGCCAATGTTCCAGATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACCGCCTCCACCTCTAGTGCAGTCTCGAATACTAATGTCTCTCAAGGAACTTCAGGGGAACCCAATGAAGCTGTCAGTGATGTTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTACCTCGACTTGGTACCACAGAGAACTATATCGGGAGCATCCACCGAGACTAGCTGACTCTAGATCTCGAGGTAATACAATGTGGCTCCGACAATCAGAGAGGTTTGCTTCTAAGATGATTGCACCATCTGCTAATGAGACGAGGCCTGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCAGTTGAAACTTTGAGAGGAGCTACGGCTGAACTGCGGCTACTGGCCAGACATAACATGGATAATCGAATAGTGATTGCTCAATGCGGGGCCATCGAATATTTGGTTGATTTGCTCCTGTCTGCAGACTCGAAGCTACAGGAGAATGCTGTGACAGCTCTTCTAAATTTATCGATCAATGATAATAACAAAAATGCCATTGCCCAGGCTAATGCCATTGAACCATTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTAGTTGAATTACTGGGTAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCGATATTCCACGAGAACAAGGCTAGAATCGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGCTGATGGACCCAGCTGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTCGCCACGATTCCCGAGGGTCGGTCTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTTGTCGAGGTCGTCGAGTTGGGTTCTGGGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCACAAGCGCTTCTTAGCCATTTCAGAAGCCAGAGACATGGGAATTCGGGAAGAGGGTAA 2655 44.22 MERKRMWNRRNLGRGFRERGPLNQHLLISVLRFFAAFLMPLLPIVSGFDPIKQGAMGVSLLKVLLRHISSFLQLSSTDFINLQPTLKYFHKIEGIFKLLRPILDAVVDSDIASDEELTKAFEKLDHSIDELRALLENWQLLSSKVYFVLQSEALISKIGKSCLDIFQLFQSSNENLPEELSSASLEHCVQKIKHFGKEEISSVIKDAIRNEVEGIAPSSDVLVKLADFLILRSNQEILIEAVALEKLKESAEQAENSEEAEGIDQMIALVTHLHERFIIINQSQNSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLLHTNLIPNYTVKALIANWCETNNVKLSDPSRSVNLNQLSPVLAGNFESDTHREPVFPHSPGYQPMSPQSTRSAGSGKNMNSLGVSYRDGSSSLLSHSFSEDSLSNDAGDEREIDVSRLLLSSSEDQMAKLEENGYDLVAKPSTSPSKANVPDTSGEDEPSHSHNRTASTSSAVSNTNVSQGTSGEPNEAVSDVAGESKSEPLAATSTWYHRELYREHPPRLADSRSRGNTMWLRQSERFASKMIAPSANETRPDLSAIEAQVQKVVEELKSSSVETLRGATAELRLLARHNMDNRIVIAQCGAIEYLVDLLLSADSKLQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSGRGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5237544 5251424 + CmaCh20G009820.1 Cma20g00982 316796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00982 884 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 764 805 IPR000225 GO:0005515
Cma20g00982 884 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Cma20g00982 884 PANTHER U BOX DOMAIN-CONTAINING 63 880 - -
Cma20g00982 884 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Cma20g00982 884 Gene3D - 580 880 IPR011989 -
Cma20g00982 884 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 683 IPR000225 GO:0005515
Cma20g00982 884 MobiDBLite consensus disorder prediction 478 492 - -
Cma20g00982 884 MobiDBLite consensus disorder prediction 388 423 - -
Cma20g00982 884 CDD RING-Ubox_PUB 295 337 IPR045210 -
Cma20g00982 884 SMART arm_5 712 752 IPR000225 GO:0005515
Cma20g00982 884 SMART arm_5 753 792 IPR000225 GO:0005515
Cma20g00982 884 SMART arm_5 630 670 IPR000225 GO:0005515
Cma20g00982 884 SMART arm_5 835 875 IPR000225 GO:0005515
Cma20g00982 884 SMART arm_5 793 833 IPR000225 GO:0005515
Cma20g00982 884 SMART arm_5 671 711 IPR000225 GO:0005515
Cma20g00982 884 Coils Coil 234 261 - -
Cma20g00982 884 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 723 765 IPR000225 GO:0005515
Cma20g00982 884 MobiDBLite consensus disorder prediction 473 541 - -
Cma20g00982 884 SUPERFAMILY RING/U-box 280 367 - -
Cma20g00982 884 MobiDBLite consensus disorder prediction 503 526 - -
Cma20g00982 884 MobiDBLite consensus disorder prediction 429 448 - -
Cma20g00982 884 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 63 880 - -
Cma20g00982 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 365 IPR013083 -
Cma20g00982 884 Coils Coil 452 472 - -
Cma20g00982 884 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Cma20g00982 884 MobiDBLite consensus disorder prediction 401 423 - -
Cma20g00982 884 SUPERFAMILY ARM repeat 601 873 IPR016024 -
Cma20g00982 884 Pfam Armadillo/beta-catenin-like repeat 671 710 IPR000225 GO:0005515
Cma20g00982 884 Pfam Armadillo/beta-catenin-like repeat 632 669 IPR000225 GO:0005515
Cma20g00982 884 Pfam Armadillo/beta-catenin-like repeat 714 751 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00675 Cma20g00982 CCT
Cma02g00507 Cma20g00982 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00672 Cma-Chr7:2945221 Cma20g00982 Cma-Chr20:5237544 2.38E-129 dispersed
Cma07g00675 Cma-Chr7:2951642 Cma20g00982 Cma-Chr20:5237544 9.98E-137 dispersed
Cma08g00287 Cma-Chr8:1657425 Cma20g00982 Cma-Chr20:5237544 2.89E-64 dispersed
Cma12g00597 Cma-Chr12:3115717 Cma20g00982 Cma-Chr20:5237544 9.35E-83 dispersed
Cma15g00312 Cma-Chr15:1439680 Cma20g00982 Cma-Chr20:5237544 8.22E-09 dispersed
Cma17g01336 Cma-Chr17:8981988 Cma20g00982 Cma-Chr20:5237544 2.66E-59 dispersed
Cma20g00982 Cma-Chr20:5237544 Cma18g00906 Cma-Chr18:7786736 1.32E-27 dispersed
Cma02g00507 Cma-Chr2:2723878 Cma20g00982 Cma-Chr20:5237544 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00982 - - cmax:111483613 1558.12