Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00987 ATGGAGTGGGTTCGAGGCCACCAACTGGGTCGCGGTAATTTTGCCACAATCTATTTAGCCAAGCTTACAAATGGGTCCGATCAGCATCTGCCATTAATGGCGGTGAAATCCTCTGTTTCTGAATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGAATTGCCCGCAAATCATCACTTGTTTTGGGGATGGATTTAGTGTCAAAAGAGATGGGGAGAAGTATTATAATCTGTTATTGGAGTATGCCAATGGCGGAAGCCTTGCGGATGCTCTGAAAATCCACGGCGGCGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAGGGGGATTCTTTGTGGGCTTCGGTATATTCATAGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCCAATGTGTTAATTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGACTTGCGAAACCCGCGGGAAAAATGATGGCGGCGGAAACAGAGGAGAGATTTGAGTGGAGAGGGACTCCGATGTATATGTCACCGGAGAATGTCAACGGCGGTGAGTATGAGCCGCCGTGTGATGTTTGGGCATTGGGTTGCGCCGTCGTGGAGATGGTGGCAGGAAAGCCGGCGTGGAGAGTTGGGCCGGAAACGGATATATTCGCGCTGATGATGAGGATCGGAGTCGGAGACGAAGTACCGGAGGTTCCGGAGAATCTATCAGCGGAGGGGAAAGACTTTCTCCGGCGATGTTTTGTCAAGGATCCGAAAAATCGGTGGACGGCGGAGATGCTTTTGAATCACCCATTTGTCGCTGGTGGCGGCGGTACTGTTACATTGAAGGAAGCGGAACTGGCGACGGAGTCGCCGACCGGTCCTTTCGACTTCCCGGAATTCGTTTGCTCCGAACAAGGTCCGGAAGAGTTGAGTTTGTGTTGGGGTAATTCGTCGCCGGAGATGATGAGGAGGAGGCTGGGGGAATTGGTAACCGAGAAGCCATTGCATTGGTCTGTTATGGATAGTTGGGTGACCGTGAGGTGA 1035 50.82 MEWVRGHQLGRGNFATIYLAKLTNGSDQHLPLMAVKSSVSESSVSLKNEKQILDRIGNCPQIITCFGDGFSVKRDGEKYYNLLLEYANGGSLADALKIHGGGLPEFDVRRYTRGILCGLRYIHSNGFVHCDLKLSNVLIFGNGDVKIADFGLAKPAGKMMAAETEERFEWRGTPMYMSPENVNGGEYEPPCDVWALGCAVVEMVAGKPAWRVGPETDIFALMMRIGVGDEVPEVPENLSAEGKDFLRRCFVKDPKNRWTAEMLLNHPFVAGGGGTVTLKEAELATESPTGPFDFPEFVCSEQGPEELSLCWGNSSPEMMRRRLGELVTEKPLHWSVMDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5356228 5357262 + CmaCh20G009870.1 Cma20g00987 316801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00987 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 315 - -
Cma20g00987 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Cma20g00987 344 SMART serkin_6 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00987 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cma20g00987 344 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00987 344 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Cma20g00987 344 CDD STKc_MAPKKK 2 269 - -
Cma20g00987 344 Pfam Protein kinase domain 5 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00987 344 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 315 - -
Cma20g00987 344 Gene3D Transferase(Phosphotransferase) domain 1 2 289 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00701 Cma20g00987 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00515 Cma-Chr2:2796306 Cma20g00987 Cma-Chr20:5356228 0 dispersed
Cma07g00701 Cma-Chr7:3081457 Cma20g00987 Cma-Chr20:5356228 8.05E-133 dispersed
Cma17g00914 Cma-Chr17:6881049 Cma20g00987 Cma-Chr20:5356228 2.95E-60 dispersed
Cma20g00987 Cma-Chr20:5356228 Cma20g00605 Cma-Chr20:2831848 3.19E-62 dispersed
Cma20g00987 Cma-Chr20:5356228 Cma02g00175 Cma-Chr2:804772 4.48E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69402 PF00069 Pkinase 3.30E-54 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00987 - - csv:101214756 572.392