Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01006 ATGGTGAAGTGTTTGCTTACCATTGGGATTAGGGTTCTTTGGAGAGCGAGTGGAAAAGAAGCTGTCCATAGGCCCATAGGTGCGATGGGAACAGAGATTCTAATGCTCATTCGCATTCGGATTCCACCATCAACTGGCATAACAAGCAAGCAGCAGCAGCGGCAGCAGCAGCTCAGCCTCATTTTCATCTTGCATTTTCATTTTGAATGCTTTGTGGGGCCCTTCATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCTGAAGCCATGGCTGATACTAAAGGAGATACTCCCATGTCTTCAATGTTCTGTAGAAGGAATCCCTTAAGACTCATCATTCAGGGGCTGTTGCTGTTCTCATTGTTGAGGTTGAATTATGCATCCACGGATCCTGATGTGGAAGGGGCACTTAATGATTCCAATCATCAAATAACTGATTGGAACTATCACTTAGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAACGTTATATCATTGGATTTGCAGAACAATAATATAGCTGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCCATCCCTGCAGCTTGGGGTCAACTTGCTGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCTCTATTCTTTTCAATTCCAATGTTCAACTTTTCAAGAACTGGTTTAAACTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCGACCTCTCCCCATCGAGCTTCTGTAAAGAATTCTAAGGTTGGGGTAGTGGCAAGTACTGCAAGCTGTGGGGGATTCATTCTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAGGCTTAAGGATTCCATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAGCTTGCGACCGATAACTTTAACGAGACGAACATCATTGGCCAAGGAGGGTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACTGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTCCGGTTGATTGATTTAAAACCAGGAGAAAGAAGCTTGGACTGGGCCACGAGAAAACAGATAGCCTTTGGTGCAGCTCATGGTTTGGAGTATTTGCATGAACACTGTAATCCTAAGATCATCCATCGTGATCTGAAGGCTGCAAACATATTATTAGATGACGACTTCGAAGCTGTTCTTGGAGATTTCGGATTAGCCAAGCTAATCGATACTAAAGTAACTCATATTACCACTCAAGTGCGCGGTACAATGGGTCATATCGCCCCGGAATACTTGTCCACTGGTAAGTCATCTGAAAAGACTGATGTTTTCGGATATGGTATCACCCTTCTTGAGCTTGTCACCGGTCAGCGCGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGACGTTCTTCTACTCGATCATATAAAGAAGTTGCAGAGGGAGAACAGGCTTGAAGATGTTGTGGACAAGAATTTAACGAGCTACAACGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCGTTGCTTTGCACTCAAGGTTCACCGGAGGACCGGCCGACAATGGCGGAAGTTGTGAACCTACTACATGGAGAAGGGCTAGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAGGTGTCCCTTCTTTGTCACCAATTTGTTTGGGGAGAAGAGTCAAGTCATGATCAAGAAGCCATACAAATTCAATTGAAACTTATGGGGAGAAGTGTTTCAAGGTCTCCGTCGTACACTCCTCGCTCCAATTCCTATCGCCGTAGTCGGAGAAGCAGAAGGGACACGAGTCCTTCCCCCTATCATTCCAACACCCGTTCCAGGAGAAGGAGCCGTTCAAGTTCCCTCCGTCGCCGTCGAAGTCGTTCGCCGTCATACCGTCGTCGAAGAAGTCGCTCTCCCACACGGAGACACCGCCGACGTAGAAGTAGGTCTTCCTCGTTATCCCCTTCCCCCAAATCGTCTAGTTCCAGTCCTAGTCGTGCATCCACTGATCGGAAACATTCCATAGAAAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAAGCAGAGTTGAAGAAGCTAGAAGAAGATGCAGCTAGGAGGATGGAAGAACTAATTCAGAAGAATGTTGAAGAAAGGCTAAACTCCGAAGAAACTAAATTAGAAATACAGAGGCGAATAGAGGAAGGTCGCAAGAAGTTGTTTGATGATGTTGATGTGCAGCTTGAGAAAGAGAAAGAAGCCGCTCTTACTGCTGCAAGACAGAAAGAAGAACAAGCACGGAAAGAGAGAGAAGAGCTCGACAAAATGTTGGAAGAGAATAGGAGAAGGGTAGAGGAAGCTCAACGAAGAGAAGCTCTGGAGCTGCAGCGGAAGGAAGAAGAACGATATCGTGAGCTCGAGTTGATTCAAAGACAAAAAGAGGAGGCAGCTCGGAGGAAAAAGCTGGAATAG 2646 45.2 MVKCLLTIGIRVLWRASGKEAVHRPIGAMGTEILMLIRIRIPPSTGITSKQQQRQQQLSLIFILHFHFECFVGPFMIHSSLLAAFAASEAMADTKGDTPMSSMFCRRNPLRLIIQGLLLFSLLRLNYASTDPDVEGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPAAWGQLAGLKHLDLSDNNLTGEVPALFFSIPMFNFSRTGLNCGFRLDKPCVSTSPHRASVKNSKVGVVASTASCGGFILLSIGAFFAYRCFYMHRLKDSMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIDLKPGERSLDWATRKQIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLIDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLTSYNEKEVENIVQVALLCTQGSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQIQLKLMGRSVSRSPSYTPRSNSYRRSRRSRRDTSPSPYHSNTRSRRRSRSSSLRRRRSRSPSYRRRRSRSPTRRHRRRRSRSSSLSPSPKSSSSSPSRASTDRKHSIEKLKKEEEEKKRREAELKKLEEDAARRMEELIQKNVEERLNSEETKLEIQRRIEEGRKKLFDDVDVQLEKEKEAALTAARQKEEQARKEREELDKMLEENRRRVEEAQRREALELQRKEEERYRELELIQRQKEEAARRKKLE 881
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 6426222 6438896 + CmaCh20G010060.1 Cma20g01006 316820
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01006 881 MobiDBLite consensus disorder prediction 715 731 - -
Cma20g01006 881 MobiDBLite consensus disorder prediction 732 760 - -
Cma20g01006 881 Pfam Leucine rich repeat 171 227 IPR001611 GO:0005515
Cma20g01006 881 MobiDBLite consensus disorder prediction 814 848 - -
Cma20g01006 881 Pfam Arginine and glutamate-rich 1 751 880 IPR033371 -
Cma20g01006 881 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 170 401 - -
Cma20g01006 881 ProSiteProfiles Protein kinase domain profile. 340 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01006 881 Gene3D Transferase(Phosphotransferase) domain 1 400 607 - -
Cma20g01006 881 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 400 632 - -
Cma20g01006 881 MobiDBLite consensus disorder prediction 673 714 - -
Cma20g01006 881 SMART serkin_6 340 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01006 881 Pfam Protein tyrosine and serine/threonine kinase 344 401 IPR001245 GO:0004672|GO:0006468
Cma20g01006 881 SUPERFAMILY Protein kinase-like (PK-like) 321 587 IPR011009 -
Cma20g01006 881 MobiDBLite consensus disorder prediction 641 760 - -
Cma20g01006 881 Gene3D Ribonuclease Inhibitor 133 240 IPR032675 -
Cma20g01006 881 SUPERFAMILY L domain-like 136 238 - -
Cma20g01006 881 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Cma20g01006 881 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 132 175 - -
Cma20g01006 881 Coils Coil 734 786 - -
Cma20g01006 881 PANTHER LRR RECEPTOR-LIKE KINASE 132 175 - -
Cma20g01006 881 PANTHER LRR RECEPTOR-LIKE KINASE 400 632 - -
Cma20g01006 881 Coils Coil 807 873 - -
Cma20g01006 881 Pfam Protein kinase domain 412 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01006 881 Gene3D Phosphorylase Kinase; domain 1 308 399 - -
Cma20g01006 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Cma20g01006 881 PANTHER LRR RECEPTOR-LIKE KINASE 170 401 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00001 Cma-Chr2:1756 Cma20g01006 Cma-Chr20:6426222 7.00E-41 dispersed
Cma09g01276 Cma-Chr9:8773612 Cma20g01006 Cma-Chr20:6426222 1.02E-29 dispersed
Cma09g01297 Cma-Chr9:8991455 Cma20g01006 Cma-Chr20:6426222 8.53E-20 dispersed
Cma11g01589 Cma-Chr11:10413653 Cma20g01006 Cma-Chr20:6426222 7.56E-31 dispersed
Cma20g01006 Cma-Chr20:6426222 Cma04g00818 Cma-Chr4:4193486 0 dispersed
Cma20g01006 Cma-Chr20:6426222 Cma16g00704 Cma-Chr16:3666493 0 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69403 PF00069 Pkinase 1.20E-26 CL0016 Cma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01006 - - bhj:120088289 991.104