Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g01006 | ATGGTGAAGTGTTTGCTTACCATTGGGATTAGGGTTCTTTGGAGAGCGAGTGGAAAAGAAGCTGTCCATAGGCCCATAGGTGCGATGGGAACAGAGATTCTAATGCTCATTCGCATTCGGATTCCACCATCAACTGGCATAACAAGCAAGCAGCAGCAGCGGCAGCAGCAGCTCAGCCTCATTTTCATCTTGCATTTTCATTTTGAATGCTTTGTGGGGCCCTTCATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCTGAAGCCATGGCTGATACTAAAGGAGATACTCCCATGTCTTCAATGTTCTGTAGAAGGAATCCCTTAAGACTCATCATTCAGGGGCTGTTGCTGTTCTCATTGTTGAGGTTGAATTATGCATCCACGGATCCTGATGTGGAAGGGGCACTTAATGATTCCAATCATCAAATAACTGATTGGAACTATCACTTAGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAACGTTATATCATTGGATTTGCAGAACAATAATATAGCTGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCCATCCCTGCAGCTTGGGGTCAACTTGCTGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCTCTATTCTTTTCAATTCCAATGTTCAACTTTTCAAGAACTGGTTTAAACTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCGACCTCTCCCCATCGAGCTTCTGTAAAGAATTCTAAGGTTGGGGTAGTGGCAAGTACTGCAAGCTGTGGGGGATTCATTCTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAGGCTTAAGGATTCCATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAGCTTGCGACCGATAACTTTAACGAGACGAACATCATTGGCCAAGGAGGGTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACTGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTCCGGTTGATTGATTTAAAACCAGGAGAAAGAAGCTTGGACTGGGCCACGAGAAAACAGATAGCCTTTGGTGCAGCTCATGGTTTGGAGTATTTGCATGAACACTGTAATCCTAAGATCATCCATCGTGATCTGAAGGCTGCAAACATATTATTAGATGACGACTTCGAAGCTGTTCTTGGAGATTTCGGATTAGCCAAGCTAATCGATACTAAAGTAACTCATATTACCACTCAAGTGCGCGGTACAATGGGTCATATCGCCCCGGAATACTTGTCCACTGGTAAGTCATCTGAAAAGACTGATGTTTTCGGATATGGTATCACCCTTCTTGAGCTTGTCACCGGTCAGCGCGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGACGTTCTTCTACTCGATCATATAAAGAAGTTGCAGAGGGAGAACAGGCTTGAAGATGTTGTGGACAAGAATTTAACGAGCTACAACGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCGTTGCTTTGCACTCAAGGTTCACCGGAGGACCGGCCGACAATGGCGGAAGTTGTGAACCTACTACATGGAGAAGGGCTAGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAGGTGTCCCTTCTTTGTCACCAATTTGTTTGGGGAGAAGAGTCAAGTCATGATCAAGAAGCCATACAAATTCAATTGAAACTTATGGGGAGAAGTGTTTCAAGGTCTCCGTCGTACACTCCTCGCTCCAATTCCTATCGCCGTAGTCGGAGAAGCAGAAGGGACACGAGTCCTTCCCCCTATCATTCCAACACCCGTTCCAGGAGAAGGAGCCGTTCAAGTTCCCTCCGTCGCCGTCGAAGTCGTTCGCCGTCATACCGTCGTCGAAGAAGTCGCTCTCCCACACGGAGACACCGCCGACGTAGAAGTAGGTCTTCCTCGTTATCCCCTTCCCCCAAATCGTCTAGTTCCAGTCCTAGTCGTGCATCCACTGATCGGAAACATTCCATAGAAAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAAGCAGAGTTGAAGAAGCTAGAAGAAGATGCAGCTAGGAGGATGGAAGAACTAATTCAGAAGAATGTTGAAGAAAGGCTAAACTCCGAAGAAACTAAATTAGAAATACAGAGGCGAATAGAGGAAGGTCGCAAGAAGTTGTTTGATGATGTTGATGTGCAGCTTGAGAAAGAGAAAGAAGCCGCTCTTACTGCTGCAAGACAGAAAGAAGAACAAGCACGGAAAGAGAGAGAAGAGCTCGACAAAATGTTGGAAGAGAATAGGAGAAGGGTAGAGGAAGCTCAACGAAGAGAAGCTCTGGAGCTGCAGCGGAAGGAAGAAGAACGATATCGTGAGCTCGAGTTGATTCAAAGACAAAAAGAGGAGGCAGCTCGGAGGAAAAAGCTGGAATAG | 2646 | 45.2 | MVKCLLTIGIRVLWRASGKEAVHRPIGAMGTEILMLIRIRIPPSTGITSKQQQRQQQLSLIFILHFHFECFVGPFMIHSSLLAAFAASEAMADTKGDTPMSSMFCRRNPLRLIIQGLLLFSLLRLNYASTDPDVEGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPAAWGQLAGLKHLDLSDNNLTGEVPALFFSIPMFNFSRTGLNCGFRLDKPCVSTSPHRASVKNSKVGVVASTASCGGFILLSIGAFFAYRCFYMHRLKDSMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIDLKPGERSLDWATRKQIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLIDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLTSYNEKEVENIVQVALLCTQGSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQIQLKLMGRSVSRSPSYTPRSNSYRRSRRSRRDTSPSPYHSNTRSRRRSRSSSLRRRRSRSPSYRRRRSRSPTRRHRRRRSRSSSLSPSPKSSSSSPSRASTDRKHSIEKLKKEEEEKKRREAELKKLEEDAARRMEELIQKNVEERLNSEETKLEIQRRIEEGRKKLFDDVDVQLEKEKEAALTAARQKEEQARKEREELDKMLEENRRRVEEAQRREALELQRKEEERYRELELIQRQKEEAARRKKLE | 881 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 6426222 | 6438896 | + | CmaCh20G010060.1 | Cma20g01006 | 316820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g01006 | 881 | MobiDBLite | consensus disorder prediction | 715 | 731 | - | - | |
Cma20g01006 | 881 | MobiDBLite | consensus disorder prediction | 732 | 760 | - | - | |
Cma20g01006 | 881 | Pfam | Leucine rich repeat | 171 | 227 | IPR001611 | GO:0005515 | |
Cma20g01006 | 881 | MobiDBLite | consensus disorder prediction | 814 | 848 | - | - | |
Cma20g01006 | 881 | Pfam | Arginine and glutamate-rich 1 | 751 | 880 | IPR033371 | - | |
Cma20g01006 | 881 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 170 | 401 | - | - | |
Cma20g01006 | 881 | ProSiteProfiles | Protein kinase domain profile. | 340 | 600 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g01006 | 881 | Gene3D | Transferase(Phosphotransferase) domain 1 | 400 | 607 | - | - | |
Cma20g01006 | 881 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 400 | 632 | - | - | |
Cma20g01006 | 881 | MobiDBLite | consensus disorder prediction | 673 | 714 | - | - | |
Cma20g01006 | 881 | SMART | serkin_6 | 340 | 791 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g01006 | 881 | Pfam | Protein tyrosine and serine/threonine kinase | 344 | 401 | IPR001245 | GO:0004672|GO:0006468 | |
Cma20g01006 | 881 | SUPERFAMILY | Protein kinase-like (PK-like) | 321 | 587 | IPR011009 | - | |
Cma20g01006 | 881 | MobiDBLite | consensus disorder prediction | 641 | 760 | - | - | |
Cma20g01006 | 881 | Gene3D | Ribonuclease Inhibitor | 133 | 240 | IPR032675 | - | |
Cma20g01006 | 881 | SUPERFAMILY | L domain-like | 136 | 238 | - | - | |
Cma20g01006 | 881 | ProSitePatterns | Protein kinases ATP-binding region signature. | 346 | 368 | IPR017441 | GO:0005524 | |
Cma20g01006 | 881 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 132 | 175 | - | - | |
Cma20g01006 | 881 | Coils | Coil | 734 | 786 | - | - | |
Cma20g01006 | 881 | PANTHER | LRR RECEPTOR-LIKE KINASE | 132 | 175 | - | - | |
Cma20g01006 | 881 | PANTHER | LRR RECEPTOR-LIKE KINASE | 400 | 632 | - | - | |
Cma20g01006 | 881 | Coils | Coil | 807 | 873 | - | - | |
Cma20g01006 | 881 | Pfam | Protein kinase domain | 412 | 585 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g01006 | 881 | Gene3D | Phosphorylase Kinase; domain 1 | 308 | 399 | - | - | |
Cma20g01006 | 881 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 437 | 449 | IPR008271 | GO:0004672|GO:0006468 | |
Cma20g01006 | 881 | PANTHER | LRR RECEPTOR-LIKE KINASE | 170 | 401 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00001 | Cma-Chr2:1756 | Cma20g01006 | Cma-Chr20:6426222 | 7.00E-41 | dispersed | |
Cma09g01276 | Cma-Chr9:8773612 | Cma20g01006 | Cma-Chr20:6426222 | 1.02E-29 | dispersed | |
Cma09g01297 | Cma-Chr9:8991455 | Cma20g01006 | Cma-Chr20:6426222 | 8.53E-20 | dispersed | |
Cma11g01589 | Cma-Chr11:10413653 | Cma20g01006 | Cma-Chr20:6426222 | 7.56E-31 | dispersed | |
Cma20g01006 | Cma-Chr20:6426222 | Cma04g00818 | Cma-Chr4:4193486 | 0 | dispersed | |
Cma20g01006 | Cma-Chr20:6426222 | Cma16g00704 | Cma-Chr16:3666493 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69403 | PF00069 | Pkinase | 1.20E-26 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g01006 | - | - | bhj:120088289 | 991.104 |