Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01007 ATGGAGGAGGCGATGATATCTGTGAAAACGCTGCCGTTTCTGCCTTTCTTCTTCCTTCTTGGACTTCATAACACCTTCTCCTACACAGACCCAAACGATGTTCAAGTCCTGCTATCGTTGAAAGAGGAATGGAAGAACACACCACCAACATGGAAGACATCAGTTGATCCATGTGGAGATCTCTGGGAAGGAGTTACTTGCAACGGTTATAGAGTCACTGAATTAAAATTGCCGTCTATCGGCCTTGAAGGTCATCTTAGCGGCGCCATTGGAGACCTTACTGAACTAACAACATTGGACCTGTCATTTAACAAAAAGCTCACTGGTCCGCTATCTCCTCGGTTGGGGGATTTGCGAAATTTGCGGTCCTTAATCCTAGCAGCATGTGGCTTCAGTGGGAATATTCCCGAACATTTGGGCAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCGAACAAACTCATTGGCCCTATACCGCCTACACTTGGAAAACTCTCCAAACTTGTTTTGCTAGATTTGATGGAGAATAAGTTGAATGGACCTCTCCCTGTCTCAACTTCTGATTCCCATGGTCTGGACCTTCTTCACCAAGCACAACACTTTCACTTGAGTAAGAACAAGCTATCAGGCTCTATACCACCTAAGCTTTTTAGCGCTGATATGAAGTTAATACACATAGTGTTTGATCAAAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAAGTTCTCCGACTTGATCGGAACTCTCTAACAGGAATGGTCCCATCAAACCTCACCAAATTAAGACAGATCATGCACTTGAATTTAGCACACAATAATCTAGCAGGTCAGTTGCCAAATTTAACTCAAATGACTTCACTATGCGTTGTGGACCTGAGTAACAACTCATTTGATACATCAGCAGCCCCGGATTGGTTCTCAAGCTTACCATCTCTCACCACTTTGATCGTTGAATTTGGACAACTGAAAGGATCAGTCCCAGAAACAATTTTCAGCTTGCCACAAATACAACAAATAAAACTGAAGTACAATTTATTTGATGGGACATTGAGCATGGGTGGCAACATCAATGAGCATCTGGAGCTTGTTGATTTGGAAAATAATCGCATTACCGAACTTGCGATATCTGGATATAACAAAACTTTGATGCTTGGAGGAAATCCTGCGTGTGATGTTGTTCATGTCTTGGAAGAAAATTCTTGTCAAATTTCACAACTGTCTCCAAAGCCGAATTTTCCCAGTCATGTCAACTGTGAAACTAGACTGTGCTCCACTGGCGAGAAGAATAACCCTCAAAGCTGTGAGTGTCAGTGTCCCTATGTAGGGTCTTTGCAGTTCAGAGGACCCTCGATCAGGGAATTGTCAAATGATACCTTGTTTCTGTTACTGAAAGACAACCTCTCGGAGAAACTACATCTTCCTATTGGTTCCATTGTTATTCAAAAGGCTGAGTTCGATAGTGATGATTACCTTCAGATACAACTTGAACTTTATCCACCCTTTGGAAAGTTTTTCAGTTACACAGAAATTTTGAGGATTGCGTCTGCATTGAGTCATCAAACTTTCCTTCTTCCGGCAGAATTTGGATCATTTTATTTCATTCCATCTCAGTCCCCAGTTTTAGCTTCAGATGAGAGAAATATTAGTGGCAATAGGTGGCTTATTGGGATTGCAATTGGTTGTGCCTTACTGGTCCTAAGCCTCATTGGACTTGGAATATATGCAATTAAGCAGAAGAAACGAGTATCAAAAGCGATTTCATTGAGCAGGCCATTTAGTTCTTGGTCATCGACTGAACAAGCAAGTGGAGACGCACCACAATTGAAGGGAGCAATATATTTTTCTTATGATGAGCTTAGAAAGATGACAAATAATTTCTCCAATCGTAATGAGATAGGAGTTGGAGGGTATGGAAAGGTTTATAGAGGAATGACTGGGTATGGACAAATGTTCGCAATCAAAAGAGCTAAGCAAGGATCAAAGCAGGGTGCATTTGAGTTCAAGACTGAGATTGAATTACTTTCACGAGTTCATCACAAGAATCTAGTAGCCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTAATGGATCACTTCAAGACATCCTTGGGACTTCTTATATTCATCTTGATTGGAAAAGAAGACTCATGATAGCACTCGACTCTGCAAGAGGAATAGCTTACCTTCACGAATTTGCAAATCCTCCTGCAATCCATAGAGATATCAAGTCTTCCAACATTCTCTTGGATGAATATTTAAATGCGAAGGTTGCAGATTTTGGCCTGTCTAAGCCTGTATTTGACGATGGAAAGGCACAATTATCTACCGGAGTTAAAGGCACATGGGGTTATTTAGATCCAGAATACTACACAACCCAGCAGTTAACGGAGAAGAGTGACGTGTATAGCTTTGGAGTTGTTATGCTTGAATTGATCACTGCTAAACCGGCAATTGAGAAAGGGATATGTTTAGTCGGTGAAGTGATTCGACTAACAAACAAGAGTGACAAAGCGTATTACGGATTGATGAATATAATAGATGCAACCATTAGAAAAGAGATCCCAAATGTAAGGGAGTTTGGAAGGTTCTTGGAGTTGGCCATAAAATGTGTGGAAGAATCAACTATAAATCGCCCCACGATGAGTCAAGTGGTGAAAGAAATTGAAATTTGGAGCATTACTATGCTTGGTAGTTACTTGGAAGCTGGATAA 2760 41.09 MEEAMISVKTLPFLPFFFLLGLHNTFSYTDPNDVQVLLSLKEEWKNTPPTWKTSVDPCGDLWEGVTCNGYRVTELKLPSIGLEGHLSGAIGDLTELTTLDLSFNKKLTGPLSPRLGDLRNLRSLILAACGFSGNIPEHLGNLTQLMSLALNSNKLIGPIPPTLGKLSKLVLLDLMENKLNGPLPVSTSDSHGLDLLHQAQHFHLSKNKLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLEVLRLDRNSLTGMVPSNLTKLRQIMHLNLAHNNLAGQLPNLTQMTSLCVVDLSNNSFDTSAAPDWFSSLPSLTTLIVEFGQLKGSVPETIFSLPQIQQIKLKYNLFDGTLSMGGNINEHLELVDLENNRITELAISGYNKTLMLGGNPACDVVHVLEENSCQISQLSPKPNFPSHVNCETRLCSTGEKNNPQSCECQCPYVGSLQFRGPSIRELSNDTLFLLLKDNLSEKLHLPIGSIVIQKAEFDSDDYLQIQLELYPPFGKFFSYTEILRIASALSHQTFLLPAEFGSFYFIPSQSPVLASDERNISGNRWLIGIAIGCALLVLSLIGLGIYAIKQKKRVSKAISLSRPFSSWSSTEQASGDAPQLKGAIYFSYDELRKMTNNFSNRNEIGVGGYGKVYRGMTGYGQMFAIKRAKQGSKQGAFEFKTEIELLSRVHHKNLVALVGFCCEQGEQMLVYEFMPNGSLQDILGTSYIHLDWKRRLMIALDSARGIAYLHEFANPPAIHRDIKSSNILLDEYLNAKVADFGLSKPVFDDGKAQLSTGVKGTWGYLDPEYYTTQQLTEKSDVYSFGVVMLELITAKPAIEKGICLVGEVIRLTNKSDKAYYGLMNIIDATIRKEIPNVREFGRFLELAIKCVEESTINRPTMSQVVKEIEIWSITMLGSYLEAG 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6446245 6452237 - CmaCh20G010070.1 Cma20g01007 316821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01007 919 Gene3D Ribonuclease Inhibitor 189 286 IPR032675 -
Cma20g01007 919 PANTHER LRR RECEPTOR-LIKE KINASE 15 906 - -
Cma20g01007 919 SMART serkin_6 634 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01007 919 ProSiteProfiles Protein kinase domain profile. 634 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01007 919 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524
Cma20g01007 919 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Cma20g01007 919 Gene3D Transferase(Phosphotransferase) domain 1 710 911 - -
Cma20g01007 919 SUPERFAMILY L domain-like 290 400 - -
Cma20g01007 919 SUPERFAMILY Protein kinase-like (PK-like) 614 909 IPR011009 -
Cma20g01007 919 Gene3D Phosphorylase Kinase; domain 1 605 709 - -
Cma20g01007 919 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Cma20g01007 919 Pfam Protein tyrosine and serine/threonine kinase 637 903 IPR001245 GO:0004672|GO:0006468
Cma20g01007 919 Gene3D Ribonuclease Inhibitor 287 445 IPR032675 -
Cma20g01007 919 SUPERFAMILY L domain-like 30 305 - -
Cma20g01007 919 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 906 - -
Cma20g01007 919 CDD STKc_IRAK 640 905 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01087 Cma-Chr14:7404971 Cma20g01007 Cma-Chr20:6446245 0 dispersed
Cma20g01007 Cma-Chr20:6446245 Cma04g00900 Cma-Chr4:4686817 3.79E-30 dispersed
Cma20g01007 Cma-Chr20:6446245 Cma14g00001 Cma-Chr14:353 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69404 PF07714 PK_Tyr_Ser-Thr 2.70E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01007 - - csv:101220026 1063.52