Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01017 ATGCATACTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGCCCCAAGATGCAAATTCAACTGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCTATTGAAGCAGATATCGCTAAAAGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTCCGCGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAGCCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACTATTTACGTGTAATCAACGTCAAATACATATTGATCAACGTGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTCAATGAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATATAACGCAAGCTTATTCATTACTTGTACAAGAAGAGATGCAGCGACAGGTAACCTCTAAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAGAAGAAAACAACATATTCAAAATTCGCCAAGGACAAATCGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCATTGTAAGTTTTGTGATAGAAGGAGACATACAAAAGATCGGTGTCGACAGAAAAATAATTCTACAAGGACAAGACAAGTCAATCAACACAATCATCGTGGATACCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACGGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGACAGATAGCACAAGCCTTATCTGCAATCAATCAAAACCCTTCTGGTAATTCTGACAATCACATCAATGTTGCAGGTTTGTTTCCCATATCTACATTATCTGTTAACTCTGCGAGTTCTAATTCATGGATTCTCGATAGTGGAGCTACAGATCATATAGTATCAAAATCTTCTGTTATGACTGATCCAAAGGCTGCCATCATGTCTATAATAAATTTGCCTAATGGAGAGACAACACGTGTGTCACATACTGACAATATTTTTCTTAGCCCTAACCTTAAGTTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATATTATGTCACCTTCTATCCTGATTCTTGTGTTGTGCAGGACTTGGCTACGGGGAAGATGATTGACTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTTCAATCAAATCTTCAGCTCATCAAGTATCTCAGTCATCTGATTTGTGGCATTTACGTCTAGGATATCCTTGTGGTCATAAAGGTTACAAATTGTATGACATGCAATCTCACAAATTCTTTATCAGCCGTGATGTTAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTTCTTTGACTCCTGTTGTTCCACTTCATGATCCATCCTACTTAAGCATCCATCCTCCACCTTCCATTCCTCCTTCACCTCCTATCCCTTCACCTACTACTTCGTCCTCTCCTCCACCTCCTCTAGATTTTCCCACTGATTCCAATCCTATCCCGCCTGATACATCAGCTCCACTCCGACGTTCTACTCGCACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGACACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAAACAGAACCTAAAACCTATGACGAGGCAGTTGGCAACCCTGTATGGCAGCAGGCTATGAAAGATGAAATTGTAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACCTGGTCATAAAGCTATTGGTTGTCGCTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTCATAAAGCTCGTCTTGTAGCAAAGGGATACACTCAGGTTCAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCAAAACTTACTACACTTCATTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATTCAGGCTACACTCAGTCCAAAGCAGACTACTCTTTGTTTACCAAGAGTAAAGAACCATCACGACGTGGATCGAGAGTGTGGAGTTCCAAACTCGAAGTAGAGAAATTTGATGGAACCAATAATTTTAGTGTTTGGCGAGGCGAAGTTAGCGATTTGTTGGTCATGCAAGACCTCGATGTCTCTCTCCAAGAGGAAATGCCTGAAGACATGACAGAAGCAGAATGGACGAAATTAAATCGGCAAGCCTGTGGAATTATTCGATCCTATCTTGGCAAGGATCAGAAATATCCATTTATGAAGGTTACCATGGCGAAAGAATTATGGGACAAGCTTGAAGCGAAATATATGAAGAAGAGTGTGGAAAATAAACTCTATTTGAAGAAGAAACTCTTCCGTTTTGATTACAAGGAAGGCATCTCAATGGCTGAGCATTTGGATGATTTTAACAAAATCATCACTGATTTGCTCAATCTTGATGTTAAGATTGATGACGAGGACAAGGCGTTGTTGTTATTAAACTCTTTGCCGGAATCCTACGAGTTTTTAGTAATGACCCTACTACATGGAATCACTAATATTGATTTTGAAGATGTTTCAAATGCCTTAATAAACAATGAGATGCAAAAGAAGGAAAAGGAGACGTATCAAAGCTCTAGCTCAAATGTTCTCACTGCTCATGGAAGGACTTCCAATTGA 3087 39.71 MHTLIAKKKIGFIDGTIEEPPQDANSTEFELWNQCNSMIISWLTHSIEADIAKSIIHAKTAHQVWVDLRDQFSQKNAPAIFQIQNSIATMSQGAMALSTYFTKLKALWDELEAYRTLFTCNQRQIHIDQREEDKLMQLLMGLNESYKTVRSNILMMSPLPNITQAYSLLVQEEMQRQVTSKPTENFSIASAVQKKTTYSKFAKDKSCEHCNKSGHTINECRILKFHCKFCDRRRHTKDRCRQKNNSTRTRQVNQHNHRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLRQIAQALSAINQNPSGNSDNHINVAGLFPISTLSVNSASSNSWILDSGATDHIVSKSSVMTDPKAAIMSIINLPNGETTRVSHTDNIFLSPNLKLNNVLCVPSFNLNLMSISKLTNNLKYYVTFYPDSCVVQDLATGKMIDSGKQFGGLYHISSSSIKSSAHQVSQSSDLWHLRLGYPCGHKGYKLYDMQSHKFFISRDVKFCEDDFPFSSASQTSTLASLTPVVPLHDPSYLSIHPPPSIPPSPPIPSPTTSSSPPPPLDFPTDSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGTDTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGNPVWQQAMKDEIVALERNHTWSLVPLPPGHKAIGCRWVYKIKYNSDGSVERHKARLVAKGYTQVQGIDYTETFSPTAKLTTLHCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNSGYTQSKADYSLFTKSKEPSRRGSRVWSSKLEVEKFDGTNNFSVWRGEVSDLLVMQDLDVSLQEEMPEDMTEAEWTKLNRQACGIIRSYLGKDQKYPFMKVTMAKELWDKLEAKYMKKSVENKLYLKKKLFRFDYKEGISMAEHLDDFNKIITDLLNLDVKIDDEDKALLLLNSLPESYEFLVMTLLHGITNIDFEDVSNALINNEMQKKEKETYQSSSSNVLTAHGRTSN 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7069490 7073751 + CmaCh20G010170.1 Cma20g01017 316831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01017 1028 PANTHER CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE 471 833 - -
Cma20g01017 1028 SUPERFAMILY DNA/RNA polymerases 657 794 IPR043502 -
Cma20g01017 1028 MobiDBLite consensus disorder prediction 525 560 - -
Cma20g01017 1028 PANTHER GAG-POL-RELATED RETROTRANSPOSON 471 833 - -
Cma20g01017 1028 MobiDBLite consensus disorder prediction 525 600 - -
Cma20g01017 1028 MobiDBLite consensus disorder prediction 246 263 - -
Cma20g01017 1028 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 658 813 IPR013103 -
Cma20g01017 1028 MobiDBLite consensus disorder prediction 236 263 - -
Cma20g01017 1028 Pfam gag-polypeptide of LTR copia-type 872 1008 - -
Cma20g01017 1028 Pfam gag-polypeptide of LTR copia-type 32 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00222 Cma-Chr13:1741666 Cma20g01017 Cma-Chr20:7069490 1.87E-46 dispersed
Cma17g00771 Cma-Chr17:6193303 Cma20g01017 Cma-Chr20:7069490 1.07E-129 dispersed
Cma18g00274 Cma-Chr18:1438746 Cma20g01017 Cma-Chr20:7069490 8.61E-21 dispersed
Cma18g00863 Cma-Chr18:7528444 Cma20g01017 Cma-Chr20:7069490 3.40E-41 dispersed
Cma20g01017 Cma-Chr20:7069490 Cma08g00738 Cma-Chr8:4429625 3.63E-69 dispersed
Cma20g01031 Cma-Chr20:7525317 Cma20g01017 Cma-Chr20:7069490 5.69E-09 dispersed
Cma20g01017 Cma-Chr20:7069490 Cma11g01376 Cma-Chr11:9086795 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01017 - - gra:105793364 546.969