Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01022 ATGGGAGGAACTAGTTTGGGAAGCTTCCTAATGGTCTTTGTTCTTGTTTTGACATTGTTATTGGTGGTTGTTCCGATGTCCGAGGCACAACTCCGACAGAATTTCTATGCTGATGTTTGCCCTAACGTCGAGAGCATAGTTCGAACTGCAGTTACGAAGAAGTTTCGACAAACGTTTGTTACAGTTCCTGCTACTCTTCGTCTCTTCTTCCATGATTGTTTTGTTCAGGGATGTGACGCGTCAGTTATGATTGGTTCGAGTGGAGGCAATCAAGTGGAAAAGGATCATCCAGATAATCTTTCACTAGCAGGAGATGGATTCGATACTGTAATAAAAGCGAAAGCGGCGGTTGACGCTGTGCCAGAGTGTAGAAATAAAGTCTCGTGCGCGGATATTCTTGTGATGGCAACTCGAGACGTCATTTCATTGGCTCGAGGGCCTTCATATGCGGTGGAGCTAGGGAGGAAGGATGGGCTTGTTTCAAGGGTTTCAGATGTGGAGGGAAAATTGCCTCAGCCAAGCTTTAATCTCAATCAATTGAATGCCATGTTTGCTGCTAATGGCCTTTCTCAGGCCGACATGATTGCTCTATCGGCTGCGCACACGGTAGGATTCTCCCACTGCACGAAGTTGTTGAACAGAATATACAATTTCAGCCGTACAAATCCAGTGGATCCAACGTTAAACGCGACATATGCAGCCAAGCTTCAAGGAATGTGTCCCAGAGACGTGGATCCAAGGATAGCAATAGACATGGATCCAAACACTCCCACTAGATTCGACAATATGTACTTCAAGAATCTCCAGCAAGGAATGGGCCTTTTCACTTCCGACCAAGTCCTCTTCACCGACGCAAGGTCCAGGCCCACTGTTAAGATTTGGGCCCATAGTGGACAAACCTTCTACAAGGCCTTCGTTGATGCCATGACTAAGTTGGGCCGGGTCGGAGTGAAGACCGGATCCAATGGCAATATTCGCACCGACTGTAGTGTTTTCAACTCTTGA 1005 46.87 MGGTSLGSFLMVFVLVLTLLLVVVPMSEAQLRQNFYADVCPNVESIVRTAVTKKFRQTFVTVPATLRLFFHDCFVQGCDASVMIGSSGGNQVEKDHPDNLSLAGDGFDTVIKAKAAVDAVPECRNKVSCADILVMATRDVISLARGPSYAVELGRKDGLVSRVSDVEGKLPQPSFNLNQLNAMFAANGLSQADMIALSAAHTVGFSHCTKLLNRIYNFSRTNPVDPTLNATYAAKLQGMCPRDVDPRIAIDMDPNTPTRFDNMYFKNLQQGMGLFTSDQVLFTDARSRPTVKIWAHSGQTFYKAFVDAMTKLGRVGVKTGSNGNIRTDCSVFNS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7265817 7267285 - CmaCh20G010220.1 Cma20g01022 316836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01022 334 Gene3D Peroxidase, domain 2 171 312 - -
Cma20g01022 334 PANTHER - 9 333 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 Pfam Peroxidase 48 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601
Cma20g01022 334 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 SUPERFAMILY Heme-dependent peroxidases 30 333 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PANTHER PEROXIDASE 9 333 - -
Cma20g01022 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Cma20g01022 334 ProSiteProfiles Plant heme peroxidase family profile. 30 333 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 CDD secretory_peroxidase 30 332 IPR033905 GO:0004601|GO:0042744
Cma20g01022 334 Gene3D - 34 333 - -
Cma20g01022 334 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g01022 334 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01087 Cma-Chr7:5845558 Cma20g01022 Cma-Chr20:7265817 0 dispersed
Cma15g00075 Cma-Chr15:360910 Cma20g01022 Cma-Chr20:7265817 3.64E-144 dispersed
Cma20g01022 Cma-Chr20:7265817 Cma18g00148 Cma-Chr18:760016 3.22E-95 dispersed
Cma20g01022 Cma-Chr20:7265817 Cma07g00660 Cma-Chr7:2885001 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01022 K00430 - csv:101208254 578.556