Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01049 ATGGGGGTGGAATTTGAAAACGGCCAAGCTCAGTTTCAGGATATGGAGGGTGTTAATTTCACAGATGATCAGTTAGTTGATTTCATTAGGGGGTTTCTTACTTCAGTGTCGCTGGGAAATACTGATGGGTATCACCAGCTTGTTGGTGTTATACACCACAGAGATCGATTATCCGCTGATGAGGTTGCCTTGCTCGTGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATGTCGTTCTCCACGAATCACTTCTTGCGGCAATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATGCCCTGATTGAACTAATAACATCCCTGGCTGTTTCGAGTGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAACTAATTTCATGCCGCCCCATTCCTACAAGGATTTCCTGAAGAAGCCGCATGGTCTTACAAGAAAGGATGAAGTTCTTTCTCGAGTGCACACAGCTCTAAAAGACATCTCGGACTTGGTTCCTCTTGCACCCTTGAGATTAGAGCTCATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACAATATATGTGGAGAACATGCTAAGGTTGGAAAAGGGTGCAATGAGTGAATTTGTTGGGAGGAAAATCTTAACTGCACTGGTGGATAAGCTTTTAGATCTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATTGAACTGGAAGATGACAATGAATCTACAGATGATATTGATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGTCGTAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATAGTGCTTACATTTGAACATCTTGAATCATGTGAGCGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTTCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGTTTGTCATATTCTATGCTTGTGCATTAGATCTGGAAGTTTGTGGTGCAAGATTTGCCGTTACGCTAGCTGATATGTTCATTTCCCGCAATGGTCTTCCCCTTACCAGGATGAGTGCTATTTCGTATCTTGCGAGTTATTTGTCTCGCGGGAAGTTCCTGTCAACCTCTTTGGTTACCACTATATTGAAAAGATTGGTGGATTGGTGTTTAGAATATGGCAAAACACATGATGTTGACCTGAACCCAAAGGCTCATAAAATATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGATCGATTTTGGAGATACCACGGCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCGAATCTTGACGCATAGGTTAAGCCCACTGAAGGTTTGCCTACCGTCTATTGTCGAGGAATTTCTCCGGCAGGCAAAAGTTGCTAATTTATTTACACCATCAGAGACTTTTATATTCAATGGTTTGCTGGAGTCTGAATATTCAAAGACTTTCGGTGGGATTGAAAGGCTCGACATGTTTTTTCCGTATGATCCTTGCTTGCTGAAAAGATGTGACAGATATCTTCGGCCATATTTTGTATATTGGTCGATGGTTAGACCTACATATGATGAAGAAGAAGAAGACGAAGGTAGCAGCGATGAAGATGTTGCAGAGGTTTTCCCGGATAAAATCGAGGAAAACCTTATGGACGATGAAGCAATGGCAAGAAGCTACGACGATAGAGAGTTTGACCTTGATGAATTTGATAATGCATTAGATAAAATGTCCATCACACCAAGAAATTCTCTCCCGTTAAGGCAAGATTGTGTTCGAATGCCCTCACGAATCCGACCCTCGATGAGTCCAGAATCTTTGTGA 1881 41.31 MGVEFENGQAQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRDRLSADEVALLVTCLKALSGAVSCIDVVLHESLLAAIFKMSLWDYGPNVMDALIELITSLAVSSGKYVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVPLAPLRLELIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDLEVCGARFAVTLADMFISRNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTHDVDLNPKAHKIFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRILTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPYDPCLLKRCDRYLRPYFVYWSMVRPTYDEEEEDEGSSDEDVAEVFPDKIEENLMDDEAMARSYDDREFDLDEFDNALDKMSITPRNSLPLRQDCVRMPSRIRPSMSPESL 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7801757 7807780 - CmaCh20G010490.1 Cma20g01049 316863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01049 626 Pfam RNA polymerase I specific transcription initiation factor RRN3 19 540 IPR007991 GO:0001181|GO:0006361
Cma20g01049 626 PANTHER TRANSCRIPTION INITIATION FACTOR IA RRN3 12 617 IPR007991 GO:0001181|GO:0006361
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01049 K15216 RRN3, TIFIA; RNA polymerase I-specific transcription initiation factor RRN3 - csv:101222369 1052.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00650 Cma-Chr2:3937625 Cma20g01049 Cma-Chr20:7801757 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1334 . . . . . . . . . Cmo20g01055 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0884 . . . . . . . . . . . . . . . . . . Cma20g01049 . . Cpe05g01042 Cpe16g00097 Bhi10g01727 . . . Hepe08g1213 . . Cla02g00028 Cam02g0029 Cec02g0029 Cco02g0025 Clacu02g0029 Cmu02g0029 Cre02g0371 Lsi10g00761 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003171 1 2 1 2 1 2 2 2 2 1 2 2 2 1 1 2 2 1 2 2 1 1 1 1 1 2 1 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g01049 Cma_Chr20 FPKM 8.782069 8.338972 13.038296 12.329791 8.226518 10.003404 11.087095 20.699402 20.262928 22.695448