Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01050 ATGCTGCTACCTGACCCTGCAGCTGGCCACGGTGGCTCTGTGGTGGTCGTCGGGGTCAGAATGGAACTCCAGAGTCGGGAATTGCTCACTTGGGCGCTTGTTAAGGTTGCTCAGCCTGGCGATTGCGTCATTGCTCTTCATGTCCTTGATTCTGCCGCTGTTGATGAAGGGAAGTTGACTCTGCTCTCTCTTGTGAAGTCGTTTGACTCTATGTTGTCCGCTTATGAAGGATTCTGCAACCTGAAGCAGGTTGATTTGAAGCTCAAAGTCTGCCGAGGATCGCCGGTCCGGAAAATCATTAGACGGGAAGTGGATTCGTACGGTGAGGCTTCTCTAATTCTCGGTACTTCTAAATCTCACCATAGAATCCGTTCGTCGGCCTCGGTTGCTAAGTACTGCGCTAGAAAATTGCCGAGCAGATTCAGTGTTTTAGCAGTTAATAGTGGCAAAGTCATTTTCCAGAGATTAGCGACTTTCTCAACTAAAGGCCAGTCTCGAGCAGACAAGGATAGGGACAAGAATTGTGCTGCCATTGTAGAAGTAGCTAATGAAGCAAAAGCTGATGGGTTAGCTACAAACTTTATCGACAGTCATATTTGTTTACAGAAATCTGACTCTGGTTGTAATGATAAAATGGAGAGGGACTCCGTTGAGGGCACTCCATCTTCACTTGAACGGAATGATTCCGGGACTGATTTGGTTGATGAGTTACCTGAGGACAATGCTGTGGGGAATTCACTGGCTATAGTACCATTTCATAAGCCTCAGGGATCGTTGAAGTCGAATTCCATTGTGAGTCGAGAATCATCACATTGGAAATCGAGTTGGCCGCTTCTACGACGTATATTTTTGTCCAAGCAGCATGTAGAGAAATCTTCAAAGAAGTTTTCTATGTTCCAAGGCATATTGCACGTTTCAAACATCCAGTCGTCGTCCTCGGCCTTGGTTTATCCAGATCAGAAACAGAACAGTTCTGATCAGGATCAGGGTTCCACCATTGATAGGGAGTGTGGTGCAATTGTGCCATATGGGTCCGGCTACATTTTGGGAAGCCTTCCTAAAGAGGTATTGGATTTGAAGGATAAGTACTCATCCACCTGCAGATTGTTTACTTATGAGGAACTTTTGTCAGCAACGTCTAATTTTATGCCTGAGAATATGGTTGGTAAAGGAGGTAGTAGCTATGTTTACCGAGGGCTTCTTCCTGATGGCAAGGAAATTGCTGTCAAAGTTTTGAAGCCATCTGAGAATGTTCTTAAGGAATTTGTTCAGGAAGTTGGGATCATTGCGACATCAACTCATAAGAATGTTATATCTTTAATGGGTTTTTGTTTGGAGGACAATAATTTACTGTTGGTCTACGGTTTTCTTTCAAGAGGAAGTTTGGAAGAGAATCTTCACGGTTGTAAGAAGGATGTGAATTCATTTGGTTGGCAAGAGAGGTTTAAGGTTGCTGTTGGTGTTGCTGAGGCACTAGATTATTTACATAATTGCAGGGAGGAACCTGTGATACACAGGGATGTGAAATCCTCTAACATTCTGCTTTCTGAGAATTTCGAACCTCAGCTTTCCGATTTTGGGCTTGCTAGTTGGGCATCCTTGTGCTTTCAAATCACTTGTACTGACGTAGCTGGAACGTTTGGTTACTTGGCTCCTGAGTATTTCATGCATGGCAAAGTGAGTGACAAAATCGACGTTTACGCATTCGGTGTGGTACTCCTTGAACTACTTTCAGGTAGAAAACCAATCACCGACAATTGTCCCAAGGGGCAGGAGAGCCTTGTCATGTGGGCAAAACCAATTTTGAAGGAAATCAAAGTTTCAGAATTACTAGATCCAAGCCTAGGCAGTGACTACAACGACGATCAAATAGGTCGAATGATTTTGGCTGCTACTCTTTGCATTAGACGAGCACCGAGACTCCGTCCTCAAATCAGCCTGGTCTTGAAACTTCTCCAAGGGGATGAGGAAATAACAACATGGGCAAGACAACAAATCGATGAATGCGACGAATTCGATGCGAGTGATGGAGAACCTCTACCTACTAACATTCAATCACACCTTAACCTGGCCTTGCTTGGCTTGGAAGATGACTCACTTTCTATTGGCAGTGGAATTCAAACCATCTCCATAGAGGACTACTTGCAGGGCAGATGCAGCAGCCGCTCTTCAAGCTTTAACTGA 2184 44.55 MLLPDPAAGHGGSVVVVGVRMELQSRELLTWALVKVAQPGDCVIALHVLDSAAVDEGKLTLLSLVKSFDSMLSAYEGFCNLKQVDLKLKVCRGSPVRKIIRREVDSYGEASLILGTSKSHHRIRSSASVAKYCARKLPSRFSVLAVNSGKVIFQRLATFSTKGQSRADKDRDKNCAAIVEVANEAKADGLATNFIDSHICLQKSDSGCNDKMERDSVEGTPSSLERNDSGTDLVDELPEDNAVGNSLAIVPFHKPQGSLKSNSIVSRESSHWKSSWPLLRRIFLSKQHVEKSSKKFSMFQGILHVSNIQSSSSALVYPDQKQNSSDQDQGSTIDRECGAIVPYGSGYILGSLPKEVLDLKDKYSSTCRLFTYEELLSATSNFMPENMVGKGGSSYVYRGLLPDGKEIAVKVLKPSENVLKEFVQEVGIIATSTHKNVISLMGFCLEDNNLLLVYGFLSRGSLEENLHGCKKDVNSFGWQERFKVAVGVAEALDYLHNCREEPVIHRDVKSSNILLSENFEPQLSDFGLASWASLCFQITCTDVAGTFGYLAPEYFMHGKVSDKIDVYAFGVVLLELLSGRKPITDNCPKGQESLVMWAKPILKEIKVSELLDPSLGSDYNDDQIGRMILAATLCIRRAPRLRPQISLVLKLLQGDEEITTWARQQIDECDEFDASDGEPLPTNIQSHLNLALLGLEDDSLSIGSGIQTISIEDYLQGRCSSRSSSFN 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7838863 7843433 + CmaCh20G010500.1 Cma20g01050 316864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01050 727 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 720 - -
Cma20g01050 727 SUPERFAMILY Protein kinase-like (PK-like) 364 652 IPR011009 -
Cma20g01050 727 SMART serkin_6 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01050 727 Pfam Universal stress protein family 15 139 IPR006016 -
Cma20g01050 727 Gene3D Transferase(Phosphotransferase) domain 1 457 670 - -
Cma20g01050 727 PANTHER OS01G0253100 PROTEIN 9 720 IPR045271 GO:0004714|GO:0006468
Cma20g01050 727 CDD USP_Like 24 146 - -
Cma20g01050 727 MobiDBLite consensus disorder prediction 209 231 - -
Cma20g01050 727 Gene3D - 15 197 - -
Cma20g01050 727 Gene3D Phosphorylase Kinase; domain 1 353 456 - -
Cma20g01050 727 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Cma20g01050 727 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 147 - -
Cma20g01050 727 ProSiteProfiles Protein kinase domain profile. 382 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01050 727 Pfam Protein kinase domain 385 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g01050 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01050 - - - csv:101216673 1254.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02392 Cma-Chr4:16570754 Cma20g01050 Cma-Chr20:7838863 0 dispersed
Cma15g00648 Cma-Chr15:3057352 Cma20g01050 Cma-Chr20:7838863 0 dispersed
Cma15g00741 Cma-Chr15:3606759 Cma20g01050 Cma-Chr20:7838863 1.40E-79 dispersed
Cma20g00752 Cma-Chr20:3523383 Cma20g01050 Cma-Chr20:7838863 2.42E-21 dispersed
Cma20g01050 Cma-Chr20:7838863 Cma04g00863 Cma-Chr4:4429228 9.66E-83 dispersed
Cma02g00647 Cma-Chr2:3907652 Cma20g01050 Cma-Chr20:7838863 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69406 PF00069 Pkinase 2.70E-40 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g01050 Cma_Chr20 FPKM 7.708963 8.745945 5.737128 5.860823 20.084869 21.561007 23.427691 8.337427 7.424627 7.991043