Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01053 ATGGATGAACAGGCTTCGATAGCGAATAGCACAGGCGATACAATCGTTTGCTATGCGCCTAGCATGATCACAACAAATGGGGTGTGGCAAGGCGACAACCCTCTTGATTATTCTCTCCCTCTCTTCATCTTACAGTTAACAATGGTGGTTGTGATGACTCGCACTTTGGGCGGAGTGATTTTGGGGCCTTCGGTTCTAGGGAGGAGTACAGATTTTGCCAACACAGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAACGTGGGTCTTCTCTACTTTTTGTTCTTGGTTGGTGTGGAGATGGATCTGTCAGTGATTCGTCGAACTGGGTCGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCAGCATAGGAGCTGCCTTTTCACTCCAGTTGCACAAAACAGATGAGGAATTGAACATCACTTACATTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAACTCAGAGATTGGAAGGATGGCTATGGCCTCTGCCCTTTTCAATGACATGTGTGCTTGGGCTCTCTTAGCTATAGCCATAGCCTTATCTGAGAATGATACCTCATCTATGGCTTCCTTATGGGTTATATTGTCAAGGGTTATGATCTCAGGGTTTGTTACAGATGCCCTTGGAACACACTCGGTTTTTGGGGCTTTTGTGTTCGGTTTGGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTTCTCCCTCTCTTTTTTGCAATAAGTGGGCTTAAGACTAATGTGAATCGCATAGAAGGATCAACCTCTTGGGTAGCTATTCTATTGATCACTCTCCTTGCTTTTGCTGGAAAAATCATTGGAACTCTCCTTGCTTCCATTTGTTATCAGATGTCCTATCGAGAAGATAGAAGAAGTTGGGTTGTTTTTCCTTTTCCTCTTTTCAGGCCATTCTCACCAAAGTATCAATGTAAACATAATATGCAGGTGTTGGATGATAAAACGTTCACAGTTATGGTGATTGTAGCCCTGTTTATGACTGGGATAATAACGCCTGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCGTATAAGAAACGAACAATCCAAGCATCGAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACGATCATTAACCTCCTTGATGCCTCAAACCCAACCAAAAGATCCCCAATTTGCATTTACGTTCTACACTTGGTCGAACTCACAGGCCGAGCCTCTGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCCTAAATCGAACCCAAGCTCAATCAGATCATATCATCAATGCATTCGAGAACTACGAGCAACACGTCGAATGCATCTCTGTTCAGCCGCTCACAGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGTGTGGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCCACAAATCCAGCGTTTAGATTGGTCAACCAAAATGTGTTAGCCAATGCCCCTTGTTCCGTCGGAATCCTAGTGGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCGAACAAGGAATGTCACTATAACATAACAATGTTGTTCTTCGGGGGACAAGACGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAAAATCCGCGAGTAAGCTTAATCGTAATGCGATTCATCGCTGGAGAAGAAGCATCAGAACCAACACCAGAAGATAACACATTAATAGCTTCAACTACAGAAACAGAAGCCGACAGAGAGAGGAAACTGGACGAAGAACTCATAAAGGAATTCAGAACAAAAAACTCAAATAACGATTCAATATCTTACAACGAGAAAGTCTCGAACAACGGCGAGGAGACAGTAGCAGGCATAAGATCAATGGATGATGCTCACGACCTGTTCATCGTGGGGAGAGGAGAATCTCACATATCGCCTCTCACCGCGGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGACTTCAGTTTTGAGGCTAAGTTCTGCTTCTTCTGCCATCGAGAATCCAACAAAATTCTTGGGTGATTACAATCTTCAAGGACTTCCATTACGAAGAATTGAATTTCTTGTCCACCATTTTTGCAGCAGCATGCTTTTGAAGACTTCCATTTTCAATCCCGTTCCGACTACTACGCCACCTCTTCGTCCCCCGCTCTTCTCCAGCTCCCCTTCCAGGGCAAATCTTACTGAAAATATAGCCATTGAGGGCCGCAACCTCACCTTCTCGATCACGACGAGGCAGGGCAAAATTGTGCCTATTCTTAGGGATTGCTCACTCCGGATTCCGTCAGGACAGTTTTGGATGCTTCTTGGACCTAATGGCTGTGGAAAATCCACTCTCTTGAAGGTCTTGGCTGGTCTTTTGAATGCGTCAACTGGTGCAGTATACGTCAAGAAGCCAAAGTGCTTTGTCTTCCAAAACCCCGATTATCAGGTTGTGATGCCTACTGTGGAAGCTGACGTTGCATTTGGCCTCGGTAAGTTAAATCTGACCAATGAAGAAGTTAAATCAAGGGTTCTGGAAGCTCTGAGCTCGAGATCCGTTCAAACGCTGAGTGGTGGTCAGAAGCAAAGGGTTGCCATTGCTGGTGCTTTGGCTGAAGCATGTAAAGTGCTTCTATTAGATGAACTGACCACATTCCTCGATGAGAAGGATCAGATGGGGGTGATCAAAGCAGTTAGGAGTTCTTTGCACAATTCTGAAGATGTTTCAGCATTATGGGTGACCCATCGCTTAGAAGAACTCGAGTATGCGGATGGCGCTATCTACATGGAAGACGGGAAACACAAGTTCAAGTTCGCCTTAGAGCTTGAGATAAATCCATTACAAGTCCAAGTGAAGAGGTCCTTGAAGCTAGCATCGTGGTGTGACATCGAGGCGGTAGCATTGTGGTTTAAGAAGAAGTCTATTGGAGCTCATGTTACAGGTAAATTACAAATGTTCGATGAGTTGATATACCTTCAAGATCGCCTTAGAGCTCGAGATAAATCTGTTATAAGTCCAAGTGAAGAGGTTCTTGAAGCTAGCATCGTGGTGTTAGAAGAAGTCTACTGGAACTCATGTTACAAGTAA 3288 44.68 MDEQASIANSTGDTIVCYAPSMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRTLGGVILGPSVLGRSTDFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGSKAMAIAVAGMILPFSIGAAFSLQLHKTDEELNITYIMFLGIALSVTAFPVLARILAELKLINSEIGRMAMASALFNDMCAWALLAIAIALSENDTSSMASLWVILSRVMISGFVTDALGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVNRIEGSTSWVAILLITLLAFAGKIIGTLLASICYQMSYREDRRSWVVFPFPLFRPFSPKYQCKHNMQVLDDKTFTVMVIVALFMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVECISVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKECHYNITMLFFGGQDDREALSYAWRMSENPRVSLIVMRFIAGEEASEPTPEDNTLIASTTETEADRERKLDEELIKEFRTKNSNNDSISYNEKVSNNGEETVAGIRSMDDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLRLSSASSAIENPTKFLGDYNLQGLPLRRIEFLVHHFCSSMLLKTSIFNPVPTTTPPLRPPLFSSSPSRANLTENIAIEGRNLTFSITTRQGKIVPILRDCSLRIPSGQFWMLLGPNGCGKSTLLKVLAGLLNASTGAVYVKKPKCFVFQNPDYQVVMPTVEADVAFGLGKLNLTNEEVKSRVLEALSSRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEKDQMGVIKAVRSSLHNSEDVSALWVTHRLEELEYADGAIYMEDGKHKFKFALELEINPLQVQVKRSLKLASWCDIEAVALWFKKKSIGAHVTGKLQMFDELIYLQDRLRARDKSVISPSEEVLEASIVVLEEVYWNSCYK 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7858032 7868023 + CmaCh20G010530.1 Cma20g01053 316867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01053 1095 Gene3D - 39 228 IPR038770 -
Cma20g01053 1095 PANTHER BNAA09G08340D PROTEIN 12 220 - -
Cma20g01053 1095 CDD ABC_cobalt_CbiO_domain1 807 1000 IPR015856 GO:0005524|GO:0016020|GO:0055085
Cma20g01053 1095 Gene3D - 801 1023 IPR027417 -
Cma20g01053 1095 PANTHER CATION/H + ANTIPORTER 218 736 - -
Cma20g01053 1095 PANTHER CATION/H + ANTIPORTER 12 220 - -
Cma20g01053 1095 PANTHER BNAA09G08340D PROTEIN 218 736 - -
Cma20g01053 1095 ProSitePatterns ABC transporters family signature. 923 937 IPR017871 GO:0005524
Cma20g01053 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 797 1002 IPR027417 -
Cma20g01053 1095 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 806 1023 IPR003439 GO:0005524
Cma20g01053 1095 SMART AAA_5 835 1000 IPR003593 -
Cma20g01053 1095 Pfam Sodium/hydrogen exchanger family 55 228 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma20g01053 1095 Pfam ABC transporter 826 950 IPR003439 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00628 Cma-Chr2:3792971 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma07g01365 Cma-Chr7:7791401 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma16g00568 Cma-Chr16:2924699 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma16g00569 Cma-Chr16:2931153 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma20g01053 Cma-Chr20:7858032 Cma16g00567 Cma-Chr16:2919666 8.18E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01053 - - csv:101219265 1163.67