Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01065 ATGTCTCAGAGCACTTCTCGTTTCTCTTTCATTCTCAGAAACTGTGCTCGTCTGAATGCAGTTGCCCAAGCAAAGCAAGCACACGCTCAAATCGTCATCCATGGTTTGATTCCACATTTAACTCTTGTGACAGATATCCTTTTGGTGTATTGCAAATGTGGGCTTGTGCATGACGCCCGCAAGGTGTTTGACAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTACATTTTGATGCAATTAATGTGCTTAACGAGTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGGTTAGTGTTGGTATAGGAGATGTTTATATGGGGAAGAGACTTCATTGTTGGACAATTAAACTGGGGTTTGAAGGGTATGTTGTGGTAGCCAGTACGGTTTTGGACTTCTATGCCAAATATGGGGTTGTGGGAGATGCTAAGAAGGTGTTTGATAATATGATTTTGAAAGATACAATTTCTTGGAACTCAATGATTTCTGGGTATGGGAGGGCTGGACTTTATGGGGATGCATTGGATTGTTTCAAGCGCATGCTCTTTGAAGGAGTGAAGATGGATATCATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGCAAAGAAATTCATTGCTTAGTTTTGAAGAGTCAATTATTTGTTGCTGATGTTGCTATTGGGAACTCATTGATTGATATGTATGCAAAGTGTGGAAGCCTGTTTGATGCTGAAAATGTCTTTAGGAATATGAGTAGCGTGAATATTGTTACATGGACGACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGCACTGTTTAACAAAATGAAGGATTGTGGAATCCAACCCAATTCTGTAACACTAACAGCCATTTTGGCTAGTTGCAGTCATGCAGGTTACATCAGTGAAGGGTGGAGAATTTTCAATTCTATTGTTTCAGATTATGAGGTTGAACTGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTATGTTGATAAGAAGCATGAAACACACCGCCGCAGCAAGCATTTGGGGTGCTCTGCTTTCTGGTTGTATGATGCACAAGAACCTTGAGATAGGAGAAATTGCAGCTAACCAGCTTTTCAAGTTGGAACCTACGAATCCAAGCAATTTTATAGCTTTGATTGGTATATATGAATCTCTTGGTATGTTGGATTGCGTTTCGCTGACTAGAGAGAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGTTAAGTGCAGTAAAACAAGCCAGTGGCAAGAGGGACTTGGATTTTCTTAATTGGAAATTTGCTTCAACCCCAAGTTATAGTTGA 1512 40.74 MSQSTSRFSFILRNCARLNAVAQAKQAHAQIVIHGLIPHLTLVTDILLVYCKCGLVHDARKVFDKMTHRNMHSWNILIASYVHSSLHFDAINVLNEFRGLGFLPDHYTLPQMFKVSVGIGDVYMGKRLHCWTIKLGFEGYVVVASTVLDFYAKYGVVGDAKKVFDNMILKDTISWNSMISGYGRAGLYGDALDCFKRMLFEGVKMDIMTIPSVLNACGGEGDLRKGKEIHCLVLKSQLFVADVAIGNSLIDMYAKCGSLFDAENVFRNMSSVNIVTWTTMISCYGAHGKGEKSLALFNKMKDCGIQPNSVTLTAILASCSHAGYISEGWRIFNSIVSDYEVELTVEHYACVVDLLSRFGFLQEAFMLIRSMKHTAAASIWGALLSGCMMHKNLEIGEIAANQLFKLEPTNPSNFIALIGIYESLGMLDCVSLTREKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQASGKRDLDFLNWKFASTPSYS 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8020915 8032168 + CmaCh20G010650.1 Cma20g01065 316879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01065 503 Pfam PPR repeat 247 271 IPR002885 -
Cma20g01065 503 Pfam PPR repeat 73 102 IPR002885 -
Cma20g01065 503 Pfam PPR repeat 348 372 IPR002885 -
Cma20g01065 503 Pfam PPR repeat 49 70 IPR002885 -
Cma20g01065 503 Pfam E motif 390 451 IPR046848 -
Cma20g01065 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cma20g01065 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Cma20g01065 503 PANTHER OS11G0213500 PROTEIN 3 486 - -
Cma20g01065 503 Gene3D Tetratricopeptide repeat domain 129 198 IPR011990 GO:0005515
Cma20g01065 503 Gene3D Tetratricopeptide repeat domain 213 324 IPR011990 GO:0005515
Cma20g01065 503 Gene3D Tetratricopeptide repeat domain 2 122 IPR011990 GO:0005515
Cma20g01065 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Cma20g01065 503 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Cma20g01065 503 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Cma20g01065 503 TIGRFAM PPR: pentatricopeptide repeat domain 72 105 IPR002885 -
Cma20g01065 503 PANTHER OS07G0578800 PROTEIN-RELATED 3 486 IPR045215 GO:0003723|GO:0009451
Cma20g01065 503 Gene3D Tetratricopeptide repeat domain 325 461 IPR011990 GO:0005515
Cma20g01065 503 Pfam PPR repeat family 273 319 IPR002885 -
Cma20g01065 503 Pfam PPR repeat family 170 217 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01065 - - - csv:101220461 829.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g01065 Cma-Chr20:8020915 Cma13g00326 Cma-Chr13:3793592 2.83E-36 dispersed
Cma20g01065 Cma-Chr20:8020915 Cma10g00565 Cma-Chr10:2591943 3.45E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g01065 Cma_Chr20 FPKM 0.284392 0.496269 0.660821 0.791678 1.4738 0.598554 1.481675 0.542569 0.722296 0.478074