Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01066 ATGCCCAATCCTCTCCCCAGAACAACCCCATTTCCATTTCTGTTTCAATTCACCACTGCCAAATCCACTTTCCTTTTCCTCTCCATGGCCGCCCTCTCCTTCCTCTCCTTCCTCTGCCTCTTCTTCTTCCTCTCCCTCTCCTCCGCCGTCCACCACCGCCACCACCACCTCCCATCCCATTTCACCAACTTTCCCTCCTCGGAGGAAACCCTCCGTGCCTGCAAGGCCACACGTTTCCCCAACCAATGCGGATCTTCCCTTTCTCATTCCCCTTCTCTCCCTCCCAATCCCACCACTCTCCAGATCATTCAATCCGCCATCGCCGTCTCCTCCGACGGTCTAGCCTCTGCGAAGTCCATGGTCAAGAAGATTCTCGATTCCTCTACCGATAGTCCGAATCGGACCACCGCTGCTAAGAATTGCCTCGAGGTTCTGCGGTTTTCTGAGTATCGAATTTCTCTTACCAACGATGCTGTTCGGCGAGGTCGAACCAAGGACGCGCGCGCTTGGATGAGCGCGTCTCTTCTCTACCATTACGATTGCTGGTCCGCGCTTAAGTACGCCAACGATACTCAATCTGTGAACAAAACCATGGCGTTTCTTGACTCTCTCATTGGCCTCACCAGCAACGCCCTTAGTATGTTGGCGGCTTACGACATTTCCGGTAACGATACGGCGGCGTGGACGCCGCCGAGGACTGAGCGCGATGGATTCTGGGAAGGTAGTAGCGGCGGATCTGGGTTAGGGTTTAGCGGCGGGTTCCCATCGAAGGTAGATGCTAGCGCGACGGTGTGCAAAGACGGTGCCGGGGGATGTTATAAAACTGTTCAGGAAGCTGTGAACGCGGCGCCGGATAACGCGATGGGGAAGCGATTTGTGATTCATATTAAGGAAGGCGTTTATGATGAAATCGTGAGGGTTCCGTTGGAGAAGAAGAATGTGGTGTTCTTGGGAGATGGGATGGGGAAAACGGTGATCACGGGGTCTTTGAATGTCGGCCAGCCTGGGATTTCCACTTACAACTCTGCCACTGTCGGAGTTGTTGGTGATGGATTCATGGCCAGTGGTCTGACCATTCAAAACACAGCAGGCCCTGATGCCCATCAGGCTGTGGCGTTTAGATCAGACAGTGATCTCTCAGTGATTCAAGACTGTGAGTTTCTAGGCAACCAAGACACTCTCTATGCTCATTCCCTCCGCCAATTCTACAAATCCTGTAAGATTCAAGGCAACGTAGATTTCATCTTTGGAAACTCAGCTTCCGTCTTCCAGGACTGCGAGATCCTTGTCTGTCCTCGACAGCTCAAGCCCGAGAAAGGCGAGAACAATGCCGTCACTGCTCATGGCAGGACCGACCCGGCTCAAACAACTGGTTTTGTGTTCCAGAACTGTCTCATAAATGGCACTCAGGAGTACATGGCATTGTACTACAGCAAGCCTAAAGTGCACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTACTCGAGGACGGTTTTCATACATTGTAATCTCGAGGCTCTTGTTTCTCCAGCGGGGTGGATGCCGTGGACCGGGGACTTTGCTTTGAAAACTCTTTACTATGGGGAGTTTGAGAACTCTGGGACAGGGTCAATAACCTCGGAACGAGTCGAGTGGAGTAGTCAGATACCAGCACAACATGTTTATAGTTACTCTGTTCAGAATTTCATTCAGGGAGACGAATGGATTCCTTCATCGCAGTCTTCTGAAGAATCAAAAACGATAAATTAG 1749 51.63 MPNPLPRTTPFPFLFQFTTAKSTFLFLSMAALSFLSFLCLFFFLSLSSAVHHRHHHLPSHFTNFPSSEETLRACKATRFPNQCGSSLSHSPSLPPNPTTLQIIQSAIAVSSDGLASAKSMVKKILDSSTDSPNRTTAAKNCLEVLRFSEYRISLTNDAVRRGRTKDARAWMSASLLYHYDCWSALKYANDTQSVNKTMAFLDSLIGLTSNALSMLAAYDISGNDTAAWTPPRTERDGFWEGSSGGSGLGFSGGFPSKVDASATVCKDGAGGCYKTVQEAVNAAPDNAMGKRFVIHIKEGVYDEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASVFQDCEILVCPRQLKPEKGENNAVTAHGRTDPAQTTGFVFQNCLINGTQEYMALYYSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVSPAGWMPWTGDFALKTLYYGEFENSGTGSITSERVEWSSQIPAQHVYSYSVQNFIQGDEWIPSSQSSEESKTIN 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8035512 8038470 + CmaCh20G010660.1 Cma20g01066 316880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01066 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 37 215 IPR006501 GO:0004857
Cma20g01066 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 215 IPR035513 -
Cma20g01066 582 Gene3D - 255 578 IPR012334 -
Cma20g01066 582 PANTHER PECTINESTERASE 23 572 - -
Cma20g01066 582 SUPERFAMILY Pectin lyase-like 260 571 IPR011050 -
Cma20g01066 582 CDD PMEI-like_3 73 219 - -
Cma20g01066 582 PANTHER PECTINESTERASE 23 572 - -
Cma20g01066 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 217 IPR035513 -
Cma20g01066 582 Pfam Plant invertase/pectin methylesterase inhibitor 73 214 IPR006501 GO:0004857
Cma20g01066 582 SMART PMEI_2 65 214 IPR006501 GO:0004857
Cma20g01066 582 Pfam Pectinesterase 262 566 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g01066 Cma-Chr20:8035512 Cma04g00334 Cma-Chr4:1639073 1.29E-107 dispersed
Cma20g01066 Cma-Chr20:8035512 Cma07g00299 Cma-Chr7:1326603 2.11E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01066 - - csv:101221165 934.865