Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01071 ATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGCTACTGAATCAATTCAATCCTCCCTCAAACCCAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCCATCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGACTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCTGCGAAAGATGGAGAAGCTAATGCTGCACTTCTTGATTACATGAGCTCTGTTTTAGGTGTCAAAAGAAGACAATTATCTATAGGTTCTGGCTCTAAATCAAGAGACAAGGTTGTGATCGTGGAGGAGGTAAGCTTGCAAAGTGTTTTTGATGCTTTGAATAAAGCCTTAACATGA 381 44.88 MAPAKKGKTKAPKATESIQSSLKPNNYPSCLRSVSSSSIAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSVLGVKRRQLSIGSGSKSRDKVVIVEEVSLQSVFDALNKALT 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8096025 8099627 - CmaCh20G010710.1 Cma20g01071 316885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01071 126 PANTHER OS04G0686300 PROTEIN 1 125 - -
Cma20g01071 126 Gene3D - 29 124 IPR036591 -
Cma20g01071 126 MobiDBLite consensus disorder prediction 1 25 - -
Cma20g01071 126 Pfam Uncharacterised ACR, YggU family COG1872 39 110 IPR003746 -
Cma20g01071 126 Hamap UPF0235 protein YggU [yggU]. 35 123 IPR003746 -
Cma20g01071 126 SUPERFAMILY YggU-like 29 114 IPR036591 -
Cma20g01071 126 SMART DUF167_2 35 111 IPR003746 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01071 K09131 K09131; uncharacterized protein - csv:101218498 221.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g01071 Cma-Chr20:8096025 Cma18g00321 Cma-Chr18:1710644 3.80E-09 transposed
Cma20g01071 Cma-Chr20:8096025 Cma13g00802 Cma-Chr13:6815950 4.67E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1255 . . . . . . . . . Cmo20g01078 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01071 . . . . Bhi10g02336 . . . Hepe08g1255 . . Cla02g00070 Cam02g0071 Cec02g0072 Cco02g0065 Clacu02g0069 Cmu02g0068 Cre02g0408 Lsi10g00711 . . Cme11g00074
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012106 0 3 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g01071 Cma_Chr20 FPKM 7.323276 7.583307 10.489562 8.359357 8.126146 5.27759 7.091883 7.740662 7.940664 7.608765