Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01073 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGTGATAATGGAACCGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACCGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTACGTGTTGCACCAGAAGAACACCCAGTGCTTCTTACTGAGGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGGACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCGGGTCGTGATCTAACTGATGCTTTAATGAAGATTCTCACCGAGAGAGGGTACATGTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATGAAAGAGAAGCTGGCTTATGTTGCACTTGACTATGAGCAGGAACTCGAGACTGCCAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACTATTGGAGCTGAGAGATTCCGATGCCCTGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACTTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGCAACATTGTTCTCAGTGGTGGTTCCACCATGTTCCCTGGTATTGCCGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAG 1134 47.44 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8126203 8129695 + CmaCh20G010730.1 Cma20g01073 316887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01073 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cma20g01073 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cma20g01073 377 Gene3D - 10 371 - -
Cma20g01073 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma20g01073 377 PRINTS Actin signature 28 37 IPR004000 -
Cma20g01073 377 PRINTS Actin signature 51 62 IPR004000 -
Cma20g01073 377 PRINTS Actin signature 63 85 IPR004000 -
Cma20g01073 377 PRINTS Actin signature 117 130 IPR004000 -
Cma20g01073 377 PRINTS Actin signature 142 161 IPR004000 -
Cma20g01073 377 PRINTS Actin signature 238 254 IPR004000 -
Cma20g01073 377 Gene3D - 140 340 - -
Cma20g01073 377 PANTHER ACTIN 1 376 IPR004000 -
Cma20g01073 377 SMART actin_3 7 377 IPR004000 -
Cma20g01073 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma20g01073 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma20g01073 377 PANTHER ACTIN 1 376 - -
Cma20g01073 377 Pfam Actin 5 377 IPR004000 -
Cma20g01073 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma20g01073 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01077 Cma20g01073 CCT
Cma07g00783 Cma20g01073 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00783 Cma-Chr7:3541172 Cma20g01073 Cma-Chr20:8126203 0 dispersed
Cma11g01622 Cma-Chr11:10676826 Cma20g01073 Cma-Chr20:8126203 0 dispersed
Cma20g01073 Cma-Chr20:8126203 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma02g00615 Cma-Chr2:3705529 Cma20g01073 Cma-Chr20:8126203 0 wgd
Cma20g01073 Cma-Chr20:8126203 Cma03g01077 Cma-Chr3:7386277 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01073 K10355 - csv:101215469 758.059