Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01075 ATGCGCGAAATTTCGCCTTCACCGGAAATTTCTACCGCCGTCGTGAACCGTGCCTCCGAGGATGATGATGTGGCGGCTTCCGCCGGACTTGAGGAGGAGGTTGACCGGAATTGGGCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCGTTACTGAAGGTGCGGTCTAGAATGGACTCTGTGTTTAGGGATTCGAGCATTAAAGCTCCTCTTTGGGAAGAAGTATCCAGGAAATTAGCTGAGTTTGGGTATAATAGAAGTGCGAAGAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGCAGATCAAGCAAACCGAATGGAAAAAATTATAGGTATTTTGAGCAATTACAAGCTCTAGATAATCATCCATTGCTTCCCTCTCAAGCTGATTCAAAGGAAGAATTCCCAAACAAAATTGTTCACAATGCAATTCCATGTTCCATAATAAACCCGGATTCGAATTTCGTTGAAACTACCACCACTTTGATATCGATGTCAACCACATCTTGCTCGAGTAAGGAGTCGGGTGGGACGAGGAAGAAGAAGAAGAAGAGGAAGTTGGTGGACTTTTTTGGGAGGTTAATGGAGGAGGTGATTGAAAAACAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCTTTGGAGAAATGTGAAGAAGAGAGGTTAGCTAGGGAAGAAGAATGGAAGATGCAAGAATTAGCTCGAATCAAGAACGAGCGAGAGCGTTTTAATCACGAGAGATCCATTGCAGCTGCAAAGGATGCAGCTGTTCTTTCGTTCTTGAAGGCATTTTCGGAACAGGTTGGCACGGTGCAGTTTCCCGAAAGCTTGATTCTGATGGAGAATTTGACTGGCAGGCAAGATCATAGTAATGTTGACAGAAATACAAGTACTCGAGAGAACGGAAACGATGGTAATTCGAATCAGATTAGCTCGTCTCGATGGCCGAAAGACGAGATCAATGCTCTGATTCAGCTCAAGACTAACCTGCAGATGAAGTACCAAGAAAATGGCCCTAAAGGTCCTCTTTGGGAGGAGATATCATTGTCCATGAAGAAACTTGGGTATGATAGAAATGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAATACTTCAAGAGAGTAAAGGAAAGCAACAAAAAGCGACCCGAGGACTCGAAGACATGTTCTTATTTCCAGCAGCTCGATGCATTGTACAAACAGAAATCCAAGAAAGTCATCGACAATCATCCGAATTACGAACTGAAACCCGAGGAACTATTGATGCACATGATGGGCAGCCAAGAAGAAAACCACCAACCCGAATCAGCAACAGACTATGGCAAAGCTGAGAATGCGGATAAGAACCAAGAAGACGATGACGATGACGATGACGATAACAACGACGAAGATGAATATTATTATATTGTAGCCAACAACAACAGCAATCAAGTGGAAGTAGGCAGCTGA 1476 43.56 MREISPSPEISTAVVNRASEDDDVAASAGLEEEVDRNWAGNRWPREETMALLKVRSRMDSVFRDSSIKAPLWEEVSRKLAEFGYNRSAKKCKEKFENIYKYHKRTKDGRSSKPNGKNYRYFEQLQALDNHPLLPSQADSKEEFPNKIVHNAIPCSIINPDSNFVETTTTLISMSTTSCSSKESGGTRKKKKKRKLVDFFGRLMEEVIEKQEKLQKKFVEALEKCEEERLAREEEWKMQELARIKNERERFNHERSIAAAKDAAVLSFLKAFSEQVGTVQFPESLILMENLTGRQDHSNVDRNTSTRENGNDGNSNQISSSRWPKDEINALIQLKTNLQMKYQENGPKGPLWEEISLSMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKRPEDSKTCSYFQQLDALYKQKSKKVIDNHPNYELKPEELLMHMMGSQEENHQPESATDYGKAENADKNQEDDDDDDDDNNDEDEYYYIVANNNSNQVEVGS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8150436 8153081 + CmaCh20G010750.1 Cma20g01075 316889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01075 491 SMART sant 39 101 IPR001005 -
Cma20g01075 491 SMART sant 318 380 IPR001005 -
Cma20g01075 491 MobiDBLite consensus disorder prediction 458 474 - -
Cma20g01075 491 ProSiteProfiles Myb-like domain profile. 314 378 IPR001005 -
Cma20g01075 491 PANTHER - 11 485 - -
Cma20g01075 491 CDD GT1 41 106 - -
Cma20g01075 491 Gene3D - 322 383 - -
Cma20g01075 491 Gene3D - 43 104 - -
Cma20g01075 491 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 11 485 - -
Cma20g01075 491 CDD GT1 320 385 - -
Cma20g01075 491 ProSiteProfiles Myb-like domain profile. 41 99 IPR001005 -
Cma20g01075 491 Pfam Myb/SANT-like DNA-binding domain 320 407 IPR044822 -
Cma20g01075 491 Pfam Myb/SANT-like DNA-binding domain 41 127 IPR044822 -
Cma20g01075 491 MobiDBLite consensus disorder prediction 1 31 - -
Cma20g01075 491 MobiDBLite consensus disorder prediction 295 321 - -
Cma20g01075 491 MobiDBLite consensus disorder prediction 436 475 - -
Cma20g01075 491 Coils Coil 203 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01078 Cma-Chr9:5703493 Cma20g01075 Cma-Chr20:8150436 8.92E-15 dispersed
Cma10g01006 Cma-Chr10:5252041 Cma20g01075 Cma-Chr20:8150436 1.26E-45 dispersed
Cma15g01346 Cma-Chr15:8453337 Cma20g01075 Cma-Chr20:8150436 2.46E-17 dispersed
Cma02g00613 Cma-Chr2:3684740 Cma20g01075 Cma-Chr20:8150436 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37058 PF13837 Myb_DNA-bind_4 7.20E-20 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01075 - - cmo:103499654 734.561