Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g01077 | ATGTTTGGTAGGGTGGAGATGTTGAAGCTAAAGTCAATAGTAGGATTAGCAAAGGTGGGAGGAATAGTGTTTTGTATGGGCGTGTTACTGAGACACAGCATATATGCAGGAATGTTTCTGCTGTCCAAAGCTGCCTTTGATGGCGGAATGAACAACTTTATCTTTGTTTTCTATAGGCAAGCCATAGCCACACTGTTCTTGCTACCCATCGCTTTGTATTTTGAATGGAAAACTGCGCCTCCCCTCTCATTTGTAACCTTCGCCAAGATCTTTATGCTTTCTTTATTTGGGATCACGGCAAGTCTCGATCTTCAGGGGGTTGCTCTTATTTATACATCGGCGAGTTTAGCTGCAGCAACCGTAAATTCTATTCCAGTCTTTACCTTTCTTTTCGCTCTTCTATTTAGGATTAGCAAAGGTTGGAGGAATAGTGTTTTGTACGGGCGGTGTGGTTGCCTCCTAATGATGGCTTCAAATATCTTATGGGCTTTATCACTTGTTCTTCAGGCGTTCGTACTGAAAAGTTATCCTTCAACGCTTCTTTTCACAACCCTTCAATGTCTTGTTAGCTCGTTTCAATCGTTTATTGTTGCCATTGCTTTGGAGAGAGACCTTGACGAATGGAAATTGGGTTGGGATCTAAGACTTCTTGCCGTTGTATATTGTGGAATAGTGGCAACTGGGGTTACATATTCTATTCAAACGTGGCTCATTAAGAAGAAAGGGCCCGTTTTCTTAGCCATGTCAACACCAATTGTTCTTGTCCTTACAACTCTTGGTTCGGCCTTTCTTTTTGGCGAGAATATCAGCCTCGGAAGTGGTATAGGAGGGCTCTTATTGATCGCAGGTCTGTACAGTGTGCTATGGGGAAAGAGCAAAGAGCTGAAACTCAATTTAGGGCTAAAAGAAATAGACAGAGAATGCAGTTTGCCAGTGAAAGGAAGCGACACAACTAAATCATGA | 963 | 42.47 | MFGRVEMLKLKSIVGLAKVGGIVFCMGVLLRHSIYAGMFLLSKAAFDGGMNNFIFVFYRQAIATLFLLPIALYFEWKTAPPLSFVTFAKIFMLSLFGITASLDLQGVALIYTSASLAAATVNSIPVFTFLFALLFRISKGWRNSVLYGRCGCLLMMASNILWALSLVLQAFVLKSYPSTLLFTTLQCLVSSFQSFIVAIALERDLDEWKLGWDLRLLAVVYCGIVATGVTYSIQTWLIKKKGPVFLAMSTPIVLVLTTLGSAFLFGENISLGSGIGGLLLIAGLYSVLWGKSKELKLNLGLKEIDRECSLPVKGSDTTKS | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 8164616 | 8172190 | - | CmaCh20G010770.1 | Cma20g01077 | 316891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g01077 | 320 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 58 | 136 | - | - | |
Cma20g01077 | 320 | PANTHER | WAT1-RELATED PROTEIN | 151 | 302 | - | - | |
Cma20g01077 | 320 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 208 | 292 | - | - | |
Cma20g01077 | 320 | PANTHER | WAT1-RELATED PROTEIN | 28 | 139 | - | - | |
Cma20g01077 | 320 | Pfam | EamA-like transporter family | 30 | 135 | IPR000620 | GO:0016020|GO:0016021 | |
Cma20g01077 | 320 | Pfam | EamA-like transporter family | 151 | 288 | IPR000620 | GO:0016020|GO:0016021 | |
Cma20g01077 | 320 | PANTHER | WAT1-RELATED PROTEIN | 28 | 139 | IPR030184 | GO:0016021|GO:0022857 | |
Cma20g01077 | 320 | PANTHER | WAT1-RELATED PROTEIN | 151 | 302 | IPR030184 | GO:0016021|GO:0022857 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01072 | Cma20g01077 | CCT | |
Cma07g00780 | Cma20g01077 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma20g01077 | Cma-Chr20:8164616 | Cma03g01075 | Cma-Chr3:7381658 | 2.40E-67 | dispersed | |
Cma20g01077 | Cma-Chr20:8164616 | Cma20g01078 | Cma-Chr20:8194342 | 1.81E-20 | tandem | |
Cma02g00584 | Cma-Chr2:3403872 | Cma20g01077 | Cma-Chr20:8164616 | 8.45E-113 | wgd | |
Cma20g01077 | Cma-Chr20:8164616 | Cma03g01072 | Cma-Chr3:7376133 | 1.63E-65 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g01077 | - | - | dzi:111292493 | 338.576 |