Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01077 ATGTTTGGTAGGGTGGAGATGTTGAAGCTAAAGTCAATAGTAGGATTAGCAAAGGTGGGAGGAATAGTGTTTTGTATGGGCGTGTTACTGAGACACAGCATATATGCAGGAATGTTTCTGCTGTCCAAAGCTGCCTTTGATGGCGGAATGAACAACTTTATCTTTGTTTTCTATAGGCAAGCCATAGCCACACTGTTCTTGCTACCCATCGCTTTGTATTTTGAATGGAAAACTGCGCCTCCCCTCTCATTTGTAACCTTCGCCAAGATCTTTATGCTTTCTTTATTTGGGATCACGGCAAGTCTCGATCTTCAGGGGGTTGCTCTTATTTATACATCGGCGAGTTTAGCTGCAGCAACCGTAAATTCTATTCCAGTCTTTACCTTTCTTTTCGCTCTTCTATTTAGGATTAGCAAAGGTTGGAGGAATAGTGTTTTGTACGGGCGGTGTGGTTGCCTCCTAATGATGGCTTCAAATATCTTATGGGCTTTATCACTTGTTCTTCAGGCGTTCGTACTGAAAAGTTATCCTTCAACGCTTCTTTTCACAACCCTTCAATGTCTTGTTAGCTCGTTTCAATCGTTTATTGTTGCCATTGCTTTGGAGAGAGACCTTGACGAATGGAAATTGGGTTGGGATCTAAGACTTCTTGCCGTTGTATATTGTGGAATAGTGGCAACTGGGGTTACATATTCTATTCAAACGTGGCTCATTAAGAAGAAAGGGCCCGTTTTCTTAGCCATGTCAACACCAATTGTTCTTGTCCTTACAACTCTTGGTTCGGCCTTTCTTTTTGGCGAGAATATCAGCCTCGGAAGTGGTATAGGAGGGCTCTTATTGATCGCAGGTCTGTACAGTGTGCTATGGGGAAAGAGCAAAGAGCTGAAACTCAATTTAGGGCTAAAAGAAATAGACAGAGAATGCAGTTTGCCAGTGAAAGGAAGCGACACAACTAAATCATGA 963 42.47 MFGRVEMLKLKSIVGLAKVGGIVFCMGVLLRHSIYAGMFLLSKAAFDGGMNNFIFVFYRQAIATLFLLPIALYFEWKTAPPLSFVTFAKIFMLSLFGITASLDLQGVALIYTSASLAAATVNSIPVFTFLFALLFRISKGWRNSVLYGRCGCLLMMASNILWALSLVLQAFVLKSYPSTLLFTTLQCLVSSFQSFIVAIALERDLDEWKLGWDLRLLAVVYCGIVATGVTYSIQTWLIKKKGPVFLAMSTPIVLVLTTLGSAFLFGENISLGSGIGGLLLIAGLYSVLWGKSKELKLNLGLKEIDRECSLPVKGSDTTKS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8164616 8172190 - CmaCh20G010770.1 Cma20g01077 316891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01077 320 SUPERFAMILY Multidrug resistance efflux transporter EmrE 58 136 - -
Cma20g01077 320 PANTHER WAT1-RELATED PROTEIN 151 302 - -
Cma20g01077 320 SUPERFAMILY Multidrug resistance efflux transporter EmrE 208 292 - -
Cma20g01077 320 PANTHER WAT1-RELATED PROTEIN 28 139 - -
Cma20g01077 320 Pfam EamA-like transporter family 30 135 IPR000620 GO:0016020|GO:0016021
Cma20g01077 320 Pfam EamA-like transporter family 151 288 IPR000620 GO:0016020|GO:0016021
Cma20g01077 320 PANTHER WAT1-RELATED PROTEIN 28 139 IPR030184 GO:0016021|GO:0022857
Cma20g01077 320 PANTHER WAT1-RELATED PROTEIN 151 302 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01072 Cma20g01077 CCT
Cma07g00780 Cma20g01077 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g01077 Cma-Chr20:8164616 Cma03g01075 Cma-Chr3:7381658 2.40E-67 dispersed
Cma20g01077 Cma-Chr20:8164616 Cma20g01078 Cma-Chr20:8194342 1.81E-20 tandem
Cma02g00584 Cma-Chr2:3403872 Cma20g01077 Cma-Chr20:8164616 8.45E-113 wgd
Cma20g01077 Cma-Chr20:8164616 Cma03g01072 Cma-Chr3:7376133 1.63E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01077 - - dzi:111292493 338.576