Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01079 ATGATGATGAGACTCTTCTCCTCTGCAACGTTCTCGCTTTCCTCCCTCTGTTCTTCTTCTTCCTCCTACTCCTCCTCTCTTCCTTTTCCACCACGCGTTCTCCTTCTTAGCTTATCTCAATTTGCAACTTCTTCTTCGTCTTTGAGGCGCCACGACGAAGAGTCTCGAAATGTGAGGGTTTCGGTCTGGTGGGACTTCGAGAATTGCAACATTCCCGCGGCTGTGAACGTCTTTAAGGTCGCCCATTTGATCACTGCCGCGGTAAGGGCCAATGGCATCAAAGGCCCTGTTCAGATTACTGCTTTCGGTGACATTTTACAGCTCTCCAGGGCCAACCAAGAGGCTCTCTCTTCTACTGGAATTAGCCTGACCCACATTCCTCAAGGTGGTAAGAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTACTGGGTTTCTCAAAATCCTCCACCAGCACATCTTTTTCTAATTTCTGGCGACAGGGACTTTGCTAGCATTTTGCACCGCTTAAGAATGAATAATTACAATGTGTTGCTAGCAAGCCCTGACACTGCTCCTGGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGAATACTTTGATTAGAGGGGAAAATCTAGTCGGAAGGCATTTTAATCGACCACCTGATGGTCCGTATGGTTCTTGGTATGGCCATTATAAGGTTCCTCTTGAAGACCCATATCCAGTTAATGAGCAACCGTCTTCTTTACGAGCCGAGGTTTCCGAGCTCAGTTCAGACCCTAAGCCTCGTCCCATTCCAAAGACAGTCATTAGGCAATTACACAACATTTTGAAGTTGCATCCCAAGGGAATCCTTATTACAGACCTTCGCTCAGAGTTGGGAAAGAGTATGGATAAGGACTTTTATGGTTACAAAAAGTTTTATCGCTTTCTTTTGTCAATGCCACACATTTTAAAGCTTCAAACAAATGGTGATGGCCAATGTATTGTCCGTCCAGTCACTCCAGGGTCCATAGAACCATTAGAGTGCAGTAGAGGTACATCTAGTGATGGCAATGGAGGGCAGGATCCTAATATGAGAGCAAATTTAAATAATAATGATTCCTCAACGGAATCGACCAGTGAATCAGTCCTTCCATCCCGTGAACGAAGTGCCGAAGACAGACAATTGAAGGTGAAACCATCTTCTGAATTTGGTATGTCTATTGGTGAAGGTATGGAAGGGGAATCATCAAGATTCCCGGTTTCTGAGCCACATGTTATAGAAGATTCAAAGCAAACCAGTCAATTTGAAGCTGAGAGTAGTAAGAATCCTTCAATTGGACAGCTTTCGGAGGCCGGGATGGGATTTTTTAGAAGAATATGGAGAAGGCTTTTAAGCAATAATAACCATATTTCTGAAAATGGAAGCCATAATATTTCTGAAAAATGCTCTACATCAGATGATACTTCCAAGCATAAAAGTTGTAGTGGCCTCCTTGGGAAGGCAAAAACTGTGAAGCCAATGAGTCAAGATGCTAATTGTGTGCATCCAGTTTCAATTTCACCTGATCATGAGTCTGCTAAGCTTCAGAAAACAGCCGTAGTTGCTAGTGAATATGATGTTAAATCTAGTTCTAATCCAGGATTACTTGGTAGTATTAGAAGAAATTGGTTCAAGTTTTGGGGAAAGAATACTGAGAACGGCGAAGTCAGCGAGTGTTCTTGTGAACGTAACCAGTTAAAGAATCAATCCGAGAATCACCATCTTTTTTCCAGCAATTCTTTTTGGCAAGATATCCAATCCTTTATGGAAACACCTAAAGGAGTTAAGATTATTTCGCGGTCGAAAACCAGGTCGGAGATAGCTGAAAATTTGCTAGAGGGAGGGCCTCCGGTTCTTAAATCTTTAAGCATTAGTGATCTGTTCGACTTTTTGGAATTGTTAATATCAGATAAGAAATGGGTTGTGGAATGCCCGTCTGAAGCAAATCCTTTTAAGCTCACTCTCTCTGTTGCTAGGAAAAGCTCTTGCACGAAACAGTTGCATCATGCAAATGGGTTGGCATCAATCTTTATGAACAAAGTGTCACAGTGCAGCTTGCAGGGATCTGCAGAACATGATTCAGATTCTGATAAGAAAAATGAAAATATTCCTCAAGCTGGATATTATACAACTATGACTAGAAGAAAGTTTCCAGAGAGGACAAGAAGCGAGATATTAGGCGACTGTCGAAAGCTCGTGGATGAGATCTTGAGGGATCACCCCGAAGGATATAAGATGGGGGCTTTCAGAAAACTGTTTCTTGAGAAGTATGGGTATCATCTTAACTTGCAGAAGCTTGGTTACCATAAGTTGGCGTCCTTGCTACAGATAATGCCTGGAGTGGCAGTAGCATCCACATTGATAGTTCCTACCAGTAAGGCCCCAAAGGTTTCGAAATTGGAAACTTCCCTTCTCAGCGATCCTGAGAAAAAGACGTCCCACATCGTAGTAACCTCTGATAATGAATCATCTGACCTGCTTAGAAAGGATGATGATTTCGAGTCCTCTTGGGAAGAATTGGGTCCAGCCTGCACAGATTGGAGCAACATAAATGAAGCAGAATCGACATTGATTAGTGATACAGCAGAAGCGACAGTGAAAAGACCAATGGTTGATTATGAACCTGTCCTTCCAGAGGATGAATTAACAGAATCTGATGGAGAATCTTGTCATGCTACACACAGATCAGAAGAGCAAGCCAAGCAACGACCAGACGAGGAAGAAAGCTCATTAATACAGATTCTCGATTCATGGTATAGCAACAAAGAAGACAGTAGGAAAAACAAGTCGGAAAATAACGATGAGAGGATCGATTGTTCTGAAAATAGTTTGAAGCTTTCTAGTTTAGCTGCCAAAAGTGAAGCAAATACAGAGAGCTTTGCTAGAAAACAAAGACATCAAAAGAGCTATTCTTTTGTTTCAGACACGGATGAAAAGGACGATGTAGAGCTGATTGATGGGATTTTTGGCATGTTGAAGAAATCAAGCGAGTCACGGATACATAATTGA 3024 42.29 MMMRLFSSATFSLSSLCSSSSSYSSSLPFPPRVLLLSLSQFATSSSSLRRHDEESRNVRVSVWWDFENCNIPAAVNVFKVAHLITAAVRANGIKGPVQITAFGDILQLSRANQEALSSTGISLTHIPQGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMNNYNVLLASPDTAPGVLCSAASIMWHWNTLIRGENLVGRHFNRPPDGPYGSWYGHYKVPLEDPYPVNEQPSSLRAEVSELSSDPKPRPIPKTVIRQLHNILKLHPKGILITDLRSELGKSMDKDFYGYKKFYRFLLSMPHILKLQTNGDGQCIVRPVTPGSIEPLECSRGTSSDGNGGQDPNMRANLNNNDSSTESTSESVLPSRERSAEDRQLKVKPSSEFGMSIGEGMEGESSRFPVSEPHVIEDSKQTSQFEAESSKNPSIGQLSEAGMGFFRRIWRRLLSNNNHISENGSHNISEKCSTSDDTSKHKSCSGLLGKAKTVKPMSQDANCVHPVSISPDHESAKLQKTAVVASEYDVKSSSNPGLLGSIRRNWFKFWGKNTENGEVSECSCERNQLKNQSENHHLFSSNSFWQDIQSFMETPKGVKIISRSKTRSEIAENLLEGGPPVLKSLSISDLFDFLELLISDKKWVVECPSEANPFKLTLSVARKSSCTKQLHHANGLASIFMNKVSQCSLQGSAEHDSDSDKKNENIPQAGYYTTMTRRKFPERTRSEILGDCRKLVDEILRDHPEGYKMGAFRKLFLEKYGYHLNLQKLGYHKLASLLQIMPGVAVASTLIVPTSKAPKVSKLETSLLSDPEKKTSHIVVTSDNESSDLLRKDDDFESSWEELGPACTDWSNINEAESTLISDTAEATVKRPMVDYEPVLPEDELTESDGESCHATHRSEEQAKQRPDEEESSLIQILDSWYSNKEDSRKNKSENNDERIDCSENSLKLSSLAAKSEANTESFARKQRHQKSYSFVSDTDEKDDVELIDGIFGMLKKSSESRIHN 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8289789 8294875 + CmaCh20G010790.1 Cma20g01079 316893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01079 1007 MobiDBLite consensus disorder prediction 418 439 - -
Cma20g01079 1007 MobiDBLite consensus disorder prediction 333 440 - -
Cma20g01079 1007 ProSiteProfiles OST-type HTH domain profile. 262 331 IPR025605 -
Cma20g01079 1007 PANTHER EMB|CAB71880.1 18 947 - -
Cma20g01079 1007 MobiDBLite consensus disorder prediction 884 915 - -
Cma20g01079 1007 MobiDBLite consensus disorder prediction 462 481 - -
Cma20g01079 1007 MobiDBLite consensus disorder prediction 338 376 - -
Cma20g01079 1007 CDD LOTUS 263 328 - -
Cma20g01079 1007 Gene3D - 725 791 IPR041966 -
Cma20g01079 1007 ProSiteProfiles OST-type HTH domain profile. 730 806 IPR025605 -
Cma20g01079 1007 MobiDBLite consensus disorder prediction 963 982 - -
Cma20g01079 1007 CDD PIN_limkain_b1_N_like 59 183 - -
Cma20g01079 1007 Pfam NYN domain 59 194 IPR021139 GO:0004540
Cma20g01079 1007 Pfam OST-HTH/LOTUS domain 266 327 IPR025605 -
Cma20g01079 1007 Pfam OST-HTH/LOTUS domain 735 787 IPR025605 -
Cma20g01079 1007 MobiDBLite consensus disorder prediction 962 982 - -
Cma20g01079 1007 Gene3D - 263 331 IPR041966 -
Cma20g01079 1007 Gene3D - 51 201 - -
Cma20g01079 1007 CDD LOTUS 731 786 - -
Cma20g01079 1007 PANTHER LIMKAIN B LKAP 18 947 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cma20g01079 1007 MobiDBLite consensus disorder prediction 889 915 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01079 - - - cpep:111796232 1370.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g01079 Cma-Chr20:8289789 Cma15g00859 Cma-Chr15:4329161 1.07E-38 dispersed
Cma02g00585 Cma-Chr2:3436313 Cma20g01079 Cma-Chr20:8289789 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g01079 Cma_Chr20 FPKM 1.911099 1.879498 2.30541 2.229753 3.432568 3.407936 4.283204 4.862508 4.912619 4.91337