Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01080 ATGGCGAAATCACCGGAAGATGAACATCCACACAAGGCTTTTGGTTGGGCTGCTCGAGATTCTTCCGGCTTACTCTCCCCTTTCCATTTCTCACGAAGGGAAAATGGTGATGATGATGTCTCTATCAAAATCCTTTACTGTGGGGTTTGCCACTCTGATTTGCATATGCTCAAGAATGACTGGGGGGCAACAGATTATCCTATAGTCCCAGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGAAAACATGTGGAGAAATTCAAAGCAGGCGATGAAGTTGGGGTTGGTGTCATTGTTGGATCTTGTAGAAACTGTGAAAATTGTAAACAAGACTTGGAGAGTTACTGTCCCAAGATGGAATATACTTACAATTCCCCTGCAATCGATGGATCGAAGAATTACGGTGGCTATTCCGACAAGATCGTCGTCGATCAACATTTTGTTGTTCAATTTCCTAAGAACTTAGCTCTTGATGCTGGGGCTCCTCTCCTATGTGCTGGAATTACTGTTTATAGTCCAATGAAATATTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGCGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTTATTAGTACCTCTCCTAGGAAGAAGGAGGAAGCAATTGACAGGCTCGGGGCCGATGCTTTTGTTGTATCGAGTGATCCCGACCAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCACGCTCTTGATCCATTGATTAGTCTGCTAAACCTCAACGGAAAGTTGGTCGCGGTCGGGCTACCTAACAAACCAGTTGAACTATCGCTCGGGTTTCTAGTCTCTGGAAGGAGATTGATTGCTGGAAGCAACTTTGGTGGTCTGAAAGAGACACAAGAGATGTTGGATTTCTGTGGCAAACACAACATTACAGCTGATATTGAGCTCATTAAGATGGATGCCATTAACTCGGCTATCGAAAGGCTCGGGAAAGCTGATGTTAAATATCGGTTCGTGATCGACATCGAAAACTCGTTCAAATCGACGGTACAATAA 1089 44.17 MAKSPEDEHPHKAFGWAARDSSGLLSPFHFSRRENGDDDVSIKILYCGVCHSDLHMLKNDWGATDYPIVPGHEIVGVVTSVGKHVEKFKAGDEVGVGVIVGSCRNCENCKQDLESYCPKMEYTYNSPAIDGSKNYGGYSDKIVVDQHFVVQFPKNLALDAGAPLLCAGITVYSPMKYFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPDQLKAAMGTMDYILDTISAVHALDPLISLLNLNGKLVAVGLPNKPVELSLGFLVSGRRLIAGSNFGGLKETQEMLDFCGKHNITADIELIKMDAINSAIERLGKADVKYRFVIDIENSFKSTVQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8298392 8303269 + CmaCh20G010800.1 Cma20g01080 316894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01080 362 Gene3D - 16 353 - -
Cma20g01080 362 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cma20g01080 362 Gene3D - 167 323 - -
Cma20g01080 362 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cma20g01080 362 PANTHER ALDEHYDE REDUCTASE 2 358 - -
Cma20g01080 362 CDD CAD1 14 352 - -
Cma20g01080 362 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Cma20g01080 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cma20g01080 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 321 IPR036291 -
Cma20g01080 362 SUPERFAMILY GroES-like 20 185 IPR011032 -
Cma20g01080 362 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01986 Cma-Chr1:12775567 Cma20g01080 Cma-Chr20:8298392 3.84E-142 dispersed
Cma02g00962 Cma-Chr2:5722571 Cma20g01080 Cma-Chr20:8298392 7.25E-117 dispersed
Cma03g00852 Cma-Chr3:6370865 Cma20g01080 Cma-Chr20:8298392 8.65E-171 dispersed
Cma04g00470 Cma-Chr4:2402661 Cma20g01080 Cma-Chr20:8298392 1.27E-120 dispersed
Cma11g01723 Cma-Chr11:11428029 Cma20g01080 Cma-Chr20:8298392 2.23E-121 dispersed
Cma16g00342 Cma-Chr16:1603529 Cma20g01080 Cma-Chr20:8298392 6.82E-119 dispersed
Cma20g01080 Cma-Chr20:8298392 Cma16g00153 Cma-Chr16:671135 2.66E-19 dispersed
Cma20g01080 Cma-Chr20:8298392 Cma20g01081 Cma-Chr20:8304259 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01080 K00083 - csv:101205228 657.136