Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01081 ATGGCGAAATCTCCAGAAGATGAACACCCAAACAAGGTTTTCGGATGGGCTGCCAGAGATACATCCGGATTACTCTCTCCATTTCATTTCTCTCGAAGAGATAATGGTGCTGATGATGTGAGTATCAAAATCCTTTACTGTGGGGTTTGCCATTCTGATCTGCACTTGCTCAAGAATGATTGGGGTATCACGAATTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTTGTGACCTCTGTTGGGAATAATGTGAAGAAATTCAAAGCGGGCGATCAAGTTGGGGTTGGTGTCATAGTTGGATCTTGCAAAAGTTGTGAGAATTGTGATCAGGACTTGGAGAGTTACTGCCCCAAGTTGATATATACTTACAACTCACATTCATATGATGGAGTGAAGAATTATGGTGGTTATTCTGATAAGATCGTCGTCGATCAGCATTTCGTGCTCCGATTTCCCGACAACTTACCTCTTGATGCTGGAGCTCCACTTCTTTGTGCTGGAATCACAGTTTATAGTCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACCTCTCCAAGAAAGAAGGAGGAGGCCATCGACAGGCTCGGTGCTGATGCTTTTCTTGTTTCAAGTGACCCCGAACAGTTGAAGGCTGCCATGGGGACGATGGATTATATTATCGACACTGTGTCCGCTATCCATGCTCTTGCTCCATTGCTCGGCCTGCTAAAGCTGAATGGAAAGTTGGTCACTGTAGGTTTGCCTAACAAGCCTCTAGAACTGCCAGTTGTTTCTCTAGTTCTCGGCAGGAGGATGGTTGGTGGTAGCAACTTTGGAGGGCTGAAAGAGACACAGGAGATGTTGGATTTCTGTGCTAAGAACAACATCACTGCAGATATTGAACTCATTCAGATGGACGACATTAACTCGGCCATCGAAAGGCTTGCAAAAGCTGATGTTCGATATCGGTTTGTGATCGACATCGGAAACTCCTTGAAATAG 1077 44.66 MAKSPEDEHPNKVFGWAARDTSGLLSPFHFSRRDNGADDVSIKILYCGVCHSDLHLLKNDWGITNYPIVPGHEIVGVVTSVGNNVKKFKAGDQVGVGVIVGSCKSCENCDQDLESYCPKLIYTYNSHSYDGVKNYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFLVSSDPEQLKAAMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLELPVVSLVLGRRMVGGSNFGGLKETQEMLDFCAKNNITADIELIQMDDINSAIERLAKADVRYRFVIDIGNSLK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8304259 8307250 + CmaCh20G010810.1 Cma20g01081 316895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01081 358 PANTHER ALDEHYDE REDUCTASE 11 357 - -
Cma20g01081 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cma20g01081 358 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 11 357 - -
Cma20g01081 358 SUPERFAMILY GroES-like 21 185 IPR011032 -
Cma20g01081 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Cma20g01081 358 Gene3D - 16 353 - -
Cma20g01081 358 CDD CAD1 14 352 - -
Cma20g01081 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cma20g01081 358 Gene3D - 167 323 - -
Cma20g01081 358 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cma20g01081 358 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00585 Cma-Chr2:3436313 Cma20g01081 Cma-Chr20:8304259 2.61E-171 dispersed
Cma20g01081 Cma-Chr20:8304259 Cma16g00153 Cma-Chr16:671135 1.04E-17 dispersed
Cma20g01080 Cma-Chr20:8298392 Cma20g01081 Cma-Chr20:8304259 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01081 K00083 - csv:101205228 598.201