Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01082 ATGAAATATTGCATTGATGCTCTCTCTCTCACGAGTTCGGTGATTTTCCTAGCAGCTTTTGTAGGCGTCTTCGCTGCCACACCACCCGTTCCCGCCGAAAAGTCGAAACTAGATGCTTGGTATTCCAAAAATGTGAAGCCCTTAACCGATCGCAAGGGTGAGCTTGATCCAGCCCTTGTGGCGGCTGAAGAACGCGCCACCGTGGTTAAAGTAAGAGCTGATGGAAGTGGAGATTTCAAGACTGTCACCGAAGCCATCGCTAGTGTTCCTCCCGGTAACACCAAACGCGTCGTGATTTGGATAGGAGGAGGAGTTTATAAAGAGAAGCTTACTATTGATAGGACTAGGCCATTCATTACCCTTTATGGCTCCCCTAACAACATGCCTAACTTGACCTTTGATGGAGATGCTAAAACATACGGCACCGTTTATAGTGCATCTTTGAGCGTCGACTCTGATTATTTCGTCGCTGCCAATCTTGTCATCGAGAATTCATCTCCAAGACCAGATGGAAAAAGAAAAGGAGCTCAAGCATTAGCGGCTCGACTGAGAGGGAACAAAGCCGCAGTTTACAATTGCAAATTTATAGGGTTTCAAGACACCCTATGCGACGACGACGGCTTACATGTCTACAAGGACTGCTTCATTCAAGGCACCGTGGACTTCATCTTCGGTAAGGGAACATCGCTTTTCTTGAACACGCAGCTCGACGTGGTGGTGGTCGACAATGAATTGGGAGTGATTACAGCGCATTCAAGAGAAAAGAGAACGGACCCGAGCGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGAGGAACACCTTTTTGGGAAGGTCTTGGAGGCCATGGTCGAGAGTTGTGTATGCCTACACCACCATGGCTGACATTATTAACCGTGAAGGGTGGAACGACATGAAAATCCCGGCTTTCCACAGTACGGTGTTCTTTGGAGAATATAAGTGTTCGGGGCCGGGATCGGAGACGAGCGGCCGCGTTGATTTCAGCAAGCAGTTGAGTAATGATGAAGTGAGGCCGTTTATCAACCTTGGGTTCGTGAAGAGTGAAAAGTGGCTGCTTCCTCCTCCCCAACTCTAG 1104 48.91 MKYCIDALSLTSSVIFLAAFVGVFAATPPVPAEKSKLDAWYSKNVKPLTDRKGELDPALVAAEERATVVKVRADGSGDFKTVTEAIASVPPGNTKRVVIWIGGGVYKEKLTIDRTRPFITLYGSPNNMPNLTFDGDAKTYGTVYSASLSVDSDYFVAANLVIENSSPRPDGKRKGAQALAARLRGNKAAVYNCKFIGFQDTLCDDDGLHVYKDCFIQGTVDFIFGKGTSLFLNTQLDVVVVDNELGVITAHSREKRTDPSGYVFAHCSITGTGGRNTFLGRSWRPWSRVVYAYTTMADIINREGWNDMKIPAFHSTVFFGEYKCSGPGSETSGRVDFSKQLSNDEVRPFINLGFVKSEKWLLPPPQL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8314197 8316319 - CmaCh20G010820.1 Cma20g01082 316896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01082 367 Pfam Pectinesterase 69 356 IPR000070 GO:0030599|GO:0042545
Cma20g01082 367 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cma20g01082 367 Gene3D - 63 363 IPR012334 -
Cma20g01082 367 PANTHER PECTINESTERASE 63-RELATED 34 362 - -
Cma20g01082 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 362 - -
Cma20g01082 367 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00790 Cma-Chr10:3634710 Cma20g01082 Cma-Chr20:8314197 9.74E-135 dispersed
Cma20g00133 Cma-Chr20:623872 Cma20g01082 Cma-Chr20:8314197 0 dispersed
Cma20g00134 Cma-Chr20:625374 Cma20g01082 Cma-Chr20:8314197 0 dispersed
Cma20g01082 Cma-Chr20:8314197 Cma10g00675 Cma-Chr10:3060694 1.67E-74 dispersed
Cma20g01082 Cma-Chr20:8314197 Cma11g00653 Cma-Chr11:3173508 3.80E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01082 K01051 - csv:101205095 531.946